| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 84-128 | 45 | 1-83, 129-243 | 83 | 115 | knot |
Chain Sequence |
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYA-NKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQARVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGS-------------DGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLK
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
|
 |
3.1 | 82-128 | 47 | 1-81, 129-229 | 81 | 101 | knot | |||
| view details |
|
 |
2.1 | 80-125 | 46 | 1-79 | 132-229 | 126-131 | 79 | 98 | slipknot | |
| view details |
|
|
3.1 | 83-131 | 49 | 132-229 | 1-81 | 82-82 | 81 | 97 | slipknot |
| sequence length |
243
|
| structure length |
229
|
| publication title |
2.35 Angstrom resolution crystal structure of a putative tRNA (guanine-7-)-methyltransferase (trmD) from Staphylococcus aureus subsp. aureus MRSA252
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (guanine-N(1)-)-methyltransferase
|
| source organism |
Staphylococcus aureus subsp. aureus
|
| missing residues |
43, 157-169
|
| total genus |
 Genus: 61
|
| ec nomenclature |
ec
2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase. |
| pdb deposition date | 2009-12-04 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Trp Operon Repressor; Chain A | tRNA(m1g37)methyltransferase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 2QMM A; 3IC6 A; 3N4K A; 2YY8 A; 4H3Z A; 1X7P A; 1ZJR A; 4CNE B; 3AI9 X; 1P9P A; 3NK6 A; 1UAK A; 1UAM A; 3NK7 A; 1GZ0 A; 2O3A A; 1NXZ A; 4CNF B; 1VHK A; 1V6Z A; 1VH0 A; 1O6D A; 3N4J A; 4CNG B; 3IEF A; 3KY7 A; 2I6D A; 2QWV A; 3ILK A; 2HA8 A; 1V2X A; 3KTY A; 4IG6 A; 3GYQ A; 4H3Y A; 3ONP A; 1TO0 A; 1UAJ A; 1VHY A; 1J85 A; 1MXI A; 4FAK A; 1K3R A; 3AXZ A; 3E5Y A; 1X7O A; 3AIA A; 3DCM X; 1UAL A; 3L8U A; 3KNU A; 4E8B A; 2CX8 A; 2Z0Y A; 3QUV A; 1NS5 A; #chains in the KnotProt database with same CATH topology 2QMM A; 3IC6 A; 3N4K A; 2YY8 A; 4H3Z A; 1X7P A; 1ZJR A; 4CNE B; 3AI9 X; 1P9P A; 3NK6 A; 1UAK A; 1UAM A; 3NK7 A; 1GZ0 A; 2O3A A; 1NXZ A; 4CNF B; 1VHK A; 1V6Z A; 1VH0 A; 1O6D A; 3N4J A; 4CNG B; 3IEF A; 3KY7 A; 2I6D A; 2QWV A; 3ILK A; 2HA8 A; 1V2X A; 3KTY A; 4IG6 A; 3GYQ A; 4H3Y A; 3ONP A; 1TO0 A; 1UAJ A; 1VHY A; 1J85 A; 1MXI A; 4FAK A; 1K3R A; 3AXZ A; 3E5Y A; 1X7O A; 3AIA A; 3DCM X; 1UAL A; 3L8U A; 3KNU A; 4E8B A; 2CX8 A; 2Z0Y A; 3QUV A; 1NS5 A; #chains in the KnotProt database with same CATH homology 2QMM A; 3IC6 A; 3N4K A; 2YY8 A; 4H3Z A; 1X7P A; 1ZJR A; 4CNE B; 3AI9 X; 1P9P A; 3NK6 A; 1UAK A; 1UAM A; 3NK7 A; 1GZ0 A; 2O3A A; 1NXZ A; 4CNF B; 1VHK A; 1V6Z A; 1VH0 A; 1O6D A; 3N4J A; 4CNG B; 3IEF A; 3KY7 A; 2I6D A; 2QWV A; 3ILK A; 2HA8 A; 1V2X A; 3KTY A; 4IG6 A; 3GYQ A; 4H3Y A; 3ONP A; 1TO0 A; 1UAJ A; 1VHY A; 1J85 A; 1MXI A; 4FAK A; 1K3R A; 3AXZ A; 3E5Y A; 1X7O A; 3AIA A; 3DCM X; 1UAL A; 3L8U A; 3KNU A; 4E8B A; 2CX8 A; 2Z0Y A; 3QUV A; 1NS5 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
