3KTYA

Crystal structure of probable methyltransferase from bordetella pertussis tohama i
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 87-143 57 1-86, 144-173 86 30 knot
Chain Sequence
SNAMTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVTLAFALTTR-----PPPCDIREAAGLARRHLDDTEAGVVAIVLGTERGLTNA-QIELCHRICHIPANPQYSSLNVAQALQLAAWELRYALL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 86-138 53 1-85, 139-167 85 29 knot
view details
2.1 83-135 53 1-21, 139-167 22-82, 136-138 21 29 slipknot
view details
3.1 88-144 57 1-85, 154-167 86-87, 145-153 85 14 slipknot
sequence length 173
structure length 167
publication title Crystal Structure of Probable Methyltransferase SpoU from Bordetella pertussis Tohama I
rcsb
molecule tags Transferase
molecule keywords Probable methyltransferase
source organism Bordetella pertussis
missing residues 92-96, 130
total genus Genus: 48
ec nomenclature
pdb deposition date 2009-11-26
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ktyA01
1NS5A 1UAJA 3KTYA 1ZJRA 3QUVA 3L8UA 3KNUA 1UAKA 3AI9X 4CNEB 1NXZA 3DCMX 4CNGB 3ONPA 2HA8A 3N4KA 4IG6A 3N4JA 3ILKA 1VHKA 3IC6A 1VH0A 3AXZA 1V2XA 1O6DA 1TO0A 1K3RA 1X7PA 1GZ0A 3AIAA 2CX8A 3GYQA 2I6DA 3IEFA 3NK6A 1J85A 1P9PA 1X7OA 4H3ZA 4FAKA 3NK7A 4H3YA 2YY8A 3KY7A 2O3AA 1V6ZA 1UAMA 2QWVA 4CNFB 4E8BA 1VHYA 2QMMA 1UALA 2Z0YA 3E5YA 1MXIA
chains in the KnotProt database with same CATH superfamily
1NS5A 1UAJA 3KTYA 1ZJRA 3QUVA 3L8UA 3KNUA 1UAKA 3AI9X 4CNEB 1NXZA 3DCMX 4CNGB 3ONPA 2HA8A 3N4KA 4IG6A 3N4JA 3ILKA 1VHKA 3IC6A 1VH0A 3AXZA 1V2XA 1O6DA 1TO0A 1K3RA 1X7PA 1GZ0A 3AIAA 2CX8A 3GYQA 2I6DA 3IEFA 3NK6A 1J85A 1P9PA 1X7OA 4H3ZA 4FAKA 3NK7A 4H3YA 2YY8A 3KY7A 2O3AA 1V6ZA 1UAMA 2QWVA 4CNFB 4E8BA 1VHYA 2QMMA 1UALA 2Z0YA 3E5YA 1MXIA
chains in the KnotProt database with same CATH topology
1NS5A 1UAJA 3KTYA 1ZJRA 3QUVA 3L8UA 3KNUA 1UAKA 3AI9X 4CNEB 1NXZA 3DCMX 4CNGB 3ONPA 2HA8A 3N4KA 4IG6A 3N4JA 3ILKA 1VHKA 3IC6A 1VH0A 3AXZA 1V2XA 1O6DA 1TO0A 1K3RA 1X7PA 1GZ0A 3AIAA 2CX8A 3GYQA 2I6DA 3IEFA 3NK6A 1J85A 1P9PA 1X7OA 4H3ZA 4FAKA 3NK7A 4H3YA 2YY8A 3KY7A 2O3AA 1V6ZA 1UAMA 2QWVA 4CNFB 4E8BA 1VHYA 2QMMA 1UALA 2Z0YA 3E5YA 1MXIA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1NS5 A;  1UAJ A;  3KTY A;  1ZJR A;  3QUV A;  3L8U A;  3KNU A;  1UAK A;  3AI9 X;  4CNE B;  1NXZ A;  3DCM X;  4CNG B;  3ONP A;  2HA8 A;  3N4K A;  4IG6 A;  3N4J A;  3ILK A;  1VHK A;  3IC6 A;  1VH0 A;  3AXZ A;  1V2X A;  1O6D A;  1TO0 A;  1K3R A;  1X7P A;  1GZ0 A;  3AIA A;  2CX8 A;  3GYQ A;  2I6D A;  3IEF A;  3NK6 A;  1J85 A;  1P9P A;  1X7O A;  4H3Z A;  4FAK A;  3NK7 A;  4H3Y A;  2YY8 A;  3KY7 A;  2O3A A;  1V6Z A;  1UAM A;  2QWV A;  4CNF B;  4E8B A;  1VHY A;  2QMM A;  1UAL A;  2Z0Y A;  3E5Y A;  1MXI A; 
#chains in the KnotProt database with same CATH topology
 1NS5 A;  1UAJ A;  3KTY A;  1ZJR A;  3QUV A;  3L8U A;  3KNU A;  1UAK A;  3AI9 X;  4CNE B;  1NXZ A;  3DCM X;  4CNG B;  3ONP A;  2HA8 A;  3N4K A;  4IG6 A;  3N4J A;  3ILK A;  1VHK A;  3IC6 A;  1VH0 A;  3AXZ A;  1V2X A;  1O6D A;  1TO0 A;  1K3R A;  1X7P A;  1GZ0 A;  3AIA A;  2CX8 A;  3GYQ A;  2I6D A;  3IEF A;  3NK6 A;  1J85 A;  1P9P A;  1X7O A;  4H3Z A;  4FAK A;  3NK7 A;  4H3Y A;  2YY8 A;  3KY7 A;  2O3A A;  1V6Z A;  1UAM A;  2QWV A;  4CNF B;  4E8B A;  1VHY A;  2QMM A;  1UAL A;  2Z0Y A;  3E5Y A;  1MXI A; 
#chains in the KnotProt database with same CATH homology
 1NS5 A;  1UAJ A;  3KTY A;  1ZJR A;  3QUV A;  3L8U A;  3KNU A;  1UAK A;  3AI9 X;  4CNE B;  1NXZ A;  3DCM X;  4CNG B;  3ONP A;  2HA8 A;  3N4K A;  4IG6 A;  3N4J A;  3ILK A;  1VHK A;  3IC6 A;  1VH0 A;  3AXZ A;  1V2X A;  1O6D A;  1TO0 A;  1K3R A;  1X7P A;  1GZ0 A;  3AIA A;  2CX8 A;  3GYQ A;  2I6D A;  3IEF A;  3NK6 A;  1J85 A;  1P9P A;  1X7O A;  4H3Z A;  4FAK A;  3NK7 A;  4H3Y A;  2YY8 A;  3KY7 A;  2O3A A;  1V6Z A;  1UAM A;  2QWV A;  4CNF B;  4E8B A;  1VHY A;  2QMM A;  1UAL A;  2Z0Y A;  3E5Y A;  1MXI A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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