1NS5A

X-ray structure of ybea from e.coli. northeast structural genomics research consortium (nesg) target er45
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 71-119 49 1-70, 120-153 70 34 knot
Chain Sequence
MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 70-120 51 1-69, 121-153 69 33 knot
view details
2.1 68-117 50 1-67 123-153 118-122 67 31 slipknot
sequence length 153
structure length 153
publication title Structure of YBEA from E. coli
rcsb
molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein ybeA
source organism Escherichia coli
total genus Genus: 50
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2003-01-27
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1ns5A00
4CNFB 2QMMA 3E5YA 2O3AA 3ILKA 2YY8A 1K3RA 3ONPA 1O6DA 1UAMA 4IG6A 3KY7A 3NK6A 1ZJRA 1X7PA 1NS5A 1VHYA 2HA8A 1VHKA 4H3ZA 1VH0A 3GYQA 3N4KA 3QUVA 3DCMX 3KNUA 3N4JA 3NK7A 1J85A 1NXZA 1MXIA 1X7OA 3IC6A 1TO0A 1V2XA 1P9PA 4FAKA 1UAKA 1V6ZA 3AI9X 1UALA 2I6DA 4CNGB 1GZ0A 3KTYA 2Z0YA 3IEFA 3L8UA 4H3YA 4CNEB 3AXZA 2QWVA 4E8BA 1UAJA 2CX8A 3AIAA
chains in the KnotProt database with same CATH superfamily
4CNFB 2QMMA 3E5YA 2O3AA 3ILKA 2YY8A 1K3RA 3ONPA 1O6DA 1UAMA 4IG6A 3KY7A 3NK6A 1ZJRA 1X7PA 1NS5A 1VHYA 2HA8A 1VHKA 4H3ZA 1VH0A 3GYQA 3N4KA 3QUVA 3DCMX 3KNUA 3N4JA 3NK7A 1J85A 1NXZA 1MXIA 1X7OA 3IC6A 1TO0A 1V2XA 1P9PA 4FAKA 1UAKA 1V6ZA 3AI9X 1UALA 2I6DA 4CNGB 1GZ0A 3KTYA 2Z0YA 3IEFA 3L8UA 4H3YA 4CNEB 3AXZA 2QWVA 4E8BA 1UAJA 2CX8A 3AIAA
chains in the KnotProt database with same CATH topology
4CNFB 2QMMA 3E5YA 2O3AA 3ILKA 2YY8A 1K3RA 3ONPA 1O6DA 1UAMA 4IG6A 3KY7A 3NK6A 1ZJRA 1X7PA 1NS5A 1VHYA 2HA8A 1VHKA 4H3ZA 1VH0A 3GYQA 3N4KA 3QUVA 3DCMX 3KNUA 3N4JA 3NK7A 1J85A 1NXZA 1MXIA 1X7OA 3IC6A 1TO0A 1V2XA 1P9PA 4FAKA 1UAKA 1V6ZA 3AI9X 1UALA 2I6DA 4CNGB 1GZ0A 3KTYA 2Z0YA 3IEFA 3L8UA 4H3YA 4CNEB 3AXZA 2QWVA 4E8BA 1UAJA 2CX8A 3AIAA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 4CNF B;  2QMM A;  3E5Y A;  2O3A A;  3ILK A;  2YY8 A;  1K3R A;  3ONP A;  1O6D A;  1UAM A;  4IG6 A;  3KY7 A;  3NK6 A;  1ZJR A;  1X7P A;  1NS5 A;  1VHY A;  2HA8 A;  1VHK A;  4H3Z A;  1VH0 A;  3GYQ A;  3N4K A;  3QUV A;  3DCM X;  3KNU A;  3N4J A;  3NK7 A;  1J85 A;  1NXZ A;  1MXI A;  1X7O A;  3IC6 A;  1TO0 A;  1V2X A;  1P9P A;  4FAK A;  1UAK A;  1V6Z A;  3AI9 X;  1UAL A;  2I6D A;  4CNG B;  1GZ0 A;  3KTY A;  2Z0Y A;  3IEF A;  3L8U A;  4H3Y A;  4CNE B;  3AXZ A;  2QWV A;  4E8B A;  1UAJ A;  2CX8 A;  3AIA A; 
#chains in the KnotProt database with same CATH topology
 4CNF B;  2QMM A;  3E5Y A;  2O3A A;  3ILK A;  2YY8 A;  1K3R A;  3ONP A;  1O6D A;  1UAM A;  4IG6 A;  3KY7 A;  3NK6 A;  1ZJR A;  1X7P A;  1NS5 A;  1VHY A;  2HA8 A;  1VHK A;  4H3Z A;  1VH0 A;  3GYQ A;  3N4K A;  3QUV A;  3DCM X;  3KNU A;  3N4J A;  3NK7 A;  1J85 A;  1NXZ A;  1MXI A;  1X7O A;  3IC6 A;  1TO0 A;  1V2X A;  1P9P A;  4FAK A;  1UAK A;  1V6Z A;  3AI9 X;  1UAL A;  2I6D A;  4CNG B;  1GZ0 A;  3KTY A;  2Z0Y A;  3IEF A;  3L8U A;  4H3Y A;  4CNE B;  3AXZ A;  2QWV A;  4E8B A;  1UAJ A;  2CX8 A;  3AIA A; 
#chains in the KnotProt database with same CATH homology
 4CNF B;  2QMM A;  3E5Y A;  2O3A A;  3ILK A;  2YY8 A;  1K3R A;  3ONP A;  1O6D A;  1UAM A;  4IG6 A;  3KY7 A;  3NK6 A;  1ZJR A;  1X7P A;  1NS5 A;  1VHY A;  2HA8 A;  1VHK A;  4H3Z A;  1VH0 A;  3GYQ A;  3N4K A;  3QUV A;  3DCM X;  3KNU A;  3N4J A;  3NK7 A;  1J85 A;  1NXZ A;  1MXI A;  1X7O A;  3IC6 A;  1TO0 A;  1V2X A;  1P9P A;  4FAK A;  1UAK A;  1V6Z A;  3AI9 X;  1UAL A;  2I6D A;  4CNG B;  1GZ0 A;  3KTY A;  2Z0Y A;  3IEF A;  3L8U A;  4H3Y A;  4CNE B;  3AXZ A;  2QWV A;  4E8B A;  1UAJ A;  2CX8 A;  3AIA A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling