3N4JA

Putative rna methyltransferase from yersinia pestis
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 84-125 42 1-83, 126-161 83 36 knot
Chain Sequence
AMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 83-126 44 1-82, 127-161 82 35 knot
sequence length 161
structure length 161
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
molecule tags Transferase
molecule keywords RNA methyltransferase
source organism Yersinia pestis
total genus Genus: 52
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4jA00
3IC6A 3QUVA 1NS5A 1V6ZA 1K3RA 3IEFA 3AI9X 1VHKA 3N4KA 4CNFB 1UALA 1V2XA 1GZ0A 1VH0A 1VHYA 1O6DA 1NXZA 2HA8A 3ILKA 1X7OA 3KY7A 1UAKA 3DCMX 3AXZA 2Z0YA 4IG6A 3KNUA 3GYQA 1MXIA 3E5YA 3NK7A 1UAMA 2QMMA 3AIAA 4CNEB 1TO0A 2I6DA 2YY8A 1ZJRA 1P9PA 1UAJA 4H3ZA 3L8UA 4CNGB 1J85A 4H3YA 2QWVA 3ONPA 3NK6A 3N4JA 1X7PA 4E8BA 4FAKA 3KTYA 2O3AA 2CX8A
chains in the KnotProt database with same CATH superfamily
3IC6A 3QUVA 1NS5A 1V6ZA 1K3RA 3IEFA 3AI9X 1VHKA 3N4KA 4CNFB 1UALA 1V2XA 1GZ0A 1VH0A 1VHYA 1O6DA 1NXZA 2HA8A 3ILKA 1X7OA 3KY7A 1UAKA 3DCMX 3AXZA 2Z0YA 4IG6A 3KNUA 3GYQA 1MXIA 3E5YA 3NK7A 1UAMA 2QMMA 3AIAA 4CNEB 1TO0A 2I6DA 2YY8A 1ZJRA 1P9PA 1UAJA 4H3ZA 3L8UA 4CNGB 1J85A 4H3YA 2QWVA 3ONPA 3NK6A 3N4JA 1X7PA 4E8BA 4FAKA 3KTYA 2O3AA 2CX8A
chains in the KnotProt database with same CATH topology
3IC6A 3QUVA 1NS5A 1V6ZA 1K3RA 3IEFA 3AI9X 1VHKA 3N4KA 4CNFB 1UALA 1V2XA 1GZ0A 1VH0A 1VHYA 1O6DA 1NXZA 2HA8A 3ILKA 1X7OA 3KY7A 1UAKA 3DCMX 3AXZA 2Z0YA 4IG6A 3KNUA 3GYQA 1MXIA 3E5YA 3NK7A 1UAMA 2QMMA 3AIAA 4CNEB 1TO0A 2I6DA 2YY8A 1ZJRA 1P9PA 1UAJA 4H3ZA 3L8UA 4CNGB 1J85A 4H3YA 2QWVA 3ONPA 3NK6A 3N4JA 1X7PA 4E8BA 4FAKA 3KTYA 2O3AA 2CX8A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3IC6 A;  3QUV A;  1NS5 A;  1V6Z A;  1K3R A;  3IEF A;  3AI9 X;  1VHK A;  3N4K A;  4CNF B;  1UAL A;  1V2X A;  1GZ0 A;  1VH0 A;  1VHY A;  1O6D A;  1NXZ A;  2HA8 A;  3ILK A;  1X7O A;  3KY7 A;  1UAK A;  3DCM X;  3AXZ A;  2Z0Y A;  4IG6 A;  3KNU A;  3GYQ A;  1MXI A;  3E5Y A;  3NK7 A;  1UAM A;  2QMM A;  3AIA A;  4CNE B;  1TO0 A;  2I6D A;  2YY8 A;  1ZJR A;  1P9P A;  1UAJ A;  4H3Z A;  3L8U A;  4CNG B;  1J85 A;  4H3Y A;  2QWV A;  3ONP A;  3NK6 A;  3N4J A;  1X7P A;  4E8B A;  4FAK A;  3KTY A;  2O3A A;  2CX8 A; 
#chains in the KnotProt database with same CATH topology
 3IC6 A;  3QUV A;  1NS5 A;  1V6Z A;  1K3R A;  3IEF A;  3AI9 X;  1VHK A;  3N4K A;  4CNF B;  1UAL A;  1V2X A;  1GZ0 A;  1VH0 A;  1VHY A;  1O6D A;  1NXZ A;  2HA8 A;  3ILK A;  1X7O A;  3KY7 A;  1UAK A;  3DCM X;  3AXZ A;  2Z0Y A;  4IG6 A;  3KNU A;  3GYQ A;  1MXI A;  3E5Y A;  3NK7 A;  1UAM A;  2QMM A;  3AIA A;  4CNE B;  1TO0 A;  2I6D A;  2YY8 A;  1ZJR A;  1P9P A;  1UAJ A;  4H3Z A;  3L8U A;  4CNG B;  1J85 A;  4H3Y A;  2QWV A;  3ONP A;  3NK6 A;  3N4J A;  1X7P A;  4E8B A;  4FAK A;  3KTY A;  2O3A A;  2CX8 A; 
#chains in the KnotProt database with same CATH homology
 3IC6 A;  3QUV A;  1NS5 A;  1V6Z A;  1K3R A;  3IEF A;  3AI9 X;  1VHK A;  3N4K A;  4CNF B;  1UAL A;  1V2X A;  1GZ0 A;  1VH0 A;  1VHY A;  1O6D A;  1NXZ A;  2HA8 A;  3ILK A;  1X7O A;  3KY7 A;  1UAK A;  3DCM X;  3AXZ A;  2Z0Y A;  4IG6 A;  3KNU A;  3GYQ A;  1MXI A;  3E5Y A;  3NK7 A;  1UAM A;  2QMM A;  3AIA A;  4CNE B;  1TO0 A;  2I6D A;  2YY8 A;  1ZJR A;  1P9P A;  1UAJ A;  4H3Z A;  3L8U A;  4CNG B;  1J85 A;  4H3Y A;  2QWV A;  3ONP A;  3NK6 A;  3N4J A;  1X7P A;  4E8B A;  4FAK A;  3KTY A;  2O3A A;  2CX8 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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