| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 169-214 | 46 | 1-168, 215-246 | 168 | 32 | knot |
Chain Sequence |
RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQICFGDLGEAA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 167-215 | 49 | 1-166, 216-246 | 166 | 31 | knot | ||||
| view details |
 |
2.1 | 159-211 | 53 | 1-158 | 218-246 | 212-217 | 158 | 29 | slipknot | ||
| view details |
|
3.1 | 168-215 | 48 | 1-166, 231-246 | 167-167, 216-230 | 166 | 16 | slipknot | |||
| view details |
|
3.1 | 170-217 | 48 | 1-166, 236-246 | 167-169, 218-235 | 166 | 11 | slipknot | |||
| view details |
|
2.1 | 170-241 | 72 | 242-246 | 1-166 | 167-169 | 166 | 4 | slipknot |
| sequence length |
246
|
| structure length |
246
|
| publication title |
Functional assignment based on structural analysis: crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Hypothetical protein HI0303
|
| source organism |
Haemophilus influenzae
|
| total genus |
 Genus: 67
|
| ec nomenclature |
ec
2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase. |
| pdb deposition date | 2003-02-11 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04452 | Methyltrans_RNA | RNA methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Ribosomal Protein L25; Chain P | Hypothetical PUA domain-like; domain 1 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1NXZ A; 1MXI A; 1VHY A; 3E5Y A; 3QUV A; 3KTY A; 2QWV A; 4FAK A; 4CNE B; 4E8B A; 3IEF A; 3KNU A; 2YY8 A; 4CNG B; 4H3Z A; 1UAJ A; 4CNF B; 1K3R A; 3KW2 A; 3ONP A; 1J85 A; 3ILK A; 1P9P A; 2HA8 A; 3AI9 X; 1V6Z A; 1X7O A; 2QMM A; 1UAL A; 3L8U A; 1UAK A; 3GYQ A; 4IG6 A; 2CX8 A; 2Z0Y A; 1VH0 A; 1TO0 A; 3N4J A; 3N4K A; 3NK6 A; 1ZJR A; 3KY7 A; 1VHK A; 1UAM A; 1GZ0 A; 3IC6 A; 3NK7 A; 1O6D A; 2O3A A; 4H3Y A; 3DCM X; 1X7P A; 1NS5 A; 3AXZ A; 1V2X A; 3AIA A; 2I6D A; #chains in the KnotProt database with same CATH topology 1NXZ A; 1MXI A; 1VHY A; 3E5Y A; 3QUV A; 3KTY A; 2QWV A; 4FAK A; 4CNE B; 4E8B A; 3IEF A; 3KNU A; 2YY8 A; 4CNG B; 4H3Z A; 1UAJ A; 4CNF B; 1K3R A; 3KW2 A; 3ONP A; 1J85 A; 3ILK A; 1P9P A; 2HA8 A; 3AI9 X; 1V6Z A; 1X7O A; 2QMM A; 1UAL A; 3L8U A; 1UAK A; 3GYQ A; 4IG6 A; 2CX8 A; 2Z0Y A; 1VH0 A; 1TO0 A; 3N4J A; 3N4K A; 3NK6 A; 1ZJR A; 3KY7 A; 1VHK A; 1UAM A; 1GZ0 A; 3IC6 A; 3NK7 A; 1O6D A; 2O3A A; 4H3Y A; 3DCM X; 1X7P A; 1NS5 A; 3AXZ A; 1V2X A; 3AIA A; 2I6D A; #chains in the KnotProt database with same CATH homology 1NXZ A; 1MXI A; 1VHY A; 3E5Y A; 3QUV A; 3KTY A; 2QWV A; 4FAK A; 4CNE B; 4E8B A; 3IEF A; 3KNU A; 2YY8 A; 4CNG B; 4H3Z A; 1UAJ A; 4CNF B; 1K3R A; 3KW2 A; 3ONP A; 1J85 A; 3ILK A; 1P9P A; 2HA8 A; 3AI9 X; 1V6Z A; 1X7O A; 2QMM A; 1UAL A; 3L8U A; 1UAK A; 3GYQ A; 4IG6 A; 2CX8 A; 2Z0Y A; 1VH0 A; 1TO0 A; 3N4J A; 3N4K A; 3NK6 A; 1ZJR A; 3KY7 A; 1VHK A; 1UAM A; 1GZ0 A; 3IC6 A; 3NK7 A; 1O6D A; 2O3A A; 4H3Y A; 3DCM X; 1X7P A; 1NS5 A; 3AXZ A; 1V2X A; 3AIA A; 2I6D A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
