| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 75-124 | 50 | 1-74, 125-157 | 74 | 33 | knot |
Chain Sequence |
MNINIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEK---------MKIIKDKEGDRILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPY
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 66-116 | 51 | 1-65, 117-148 | 65 | 32 | knot | ||||
| view details |
 |
2.1 | 63-113 | 51 | 1-62 | 119-148 | 114-118 | 62 | 30 | slipknot | ||
| view details |
|
2.1 | 67-125 | 59 | 1-65, 135-148 | 66-66, 126-134 | 65 | 14 | slipknot | |||
| view details |
|
2.1 | 67-134 | 68 | 1-65, 143-148 | 66-66, 135-142 | 65 | 6 | slipknot |
| sequence length |
157
|
| structure length |
148
|
| publication title |
X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Hypothetical UPF0247 protein yyda
|
| source organism |
Bacillus subtilis
|
| missing residues |
43-51
|
| total genus |
 Genus: 41
|
| ec nomenclature |
ec
2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase. |
| pdb deposition date | 2004-06-11 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02590 | SPOUT_MTase | Predicted SPOUT methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 3ILK A; 2O3A A; 3AIA A; 3L8U A; 1P9P A; 3GYQ A; 2QWV A; 3KY7 A; 1X7O A; 3KTY A; 3ONP A; 1X7P A; 3DCM X; 3E5Y A; 1MXI A; 2QMM A; 2I6D A; 4H3Z A; 4H3Y A; 2Z0Y A; 1K3R A; 1NXZ A; 3NK7 A; 1V6Z A; 3AI9 X; 1UAM A; 1VHK A; 1GZ0 A; 1VHY A; 1ZJR A; 4CNF B; 3AXZ A; 3QUV A; 4IG6 A; 1UAJ A; 1V2X A; 2HA8 A; 3NK6 A; 4FAK A; 2YY8 A; 1O6D A; 3IC6 A; 1J85 A; 4CNE B; 3IEF A; 2CX8 A; 3KNU A; 4E8B A; 1TO0 A; 1UAL A; 3N4J A; 1NS5 A; 1UAK A; 1VH0 A; 3N4K A; 4CNG B; #chains in the KnotProt database with same CATH topology 3ILK A; 2O3A A; 3AIA A; 3L8U A; 1P9P A; 3GYQ A; 2QWV A; 3KY7 A; 1X7O A; 3KTY A; 3ONP A; 1X7P A; 3DCM X; 3E5Y A; 1MXI A; 2QMM A; 2I6D A; 4H3Z A; 4H3Y A; 2Z0Y A; 1K3R A; 1NXZ A; 3NK7 A; 1V6Z A; 3AI9 X; 1UAM A; 1VHK A; 1GZ0 A; 1VHY A; 1ZJR A; 4CNF B; 3AXZ A; 3QUV A; 4IG6 A; 1UAJ A; 1V2X A; 2HA8 A; 3NK6 A; 4FAK A; 2YY8 A; 1O6D A; 3IC6 A; 1J85 A; 4CNE B; 3IEF A; 2CX8 A; 3KNU A; 4E8B A; 1TO0 A; 1UAL A; 3N4J A; 1NS5 A; 1UAK A; 1VH0 A; 3N4K A; 4CNG B; #chains in the KnotProt database with same CATH homology 3ILK A; 2O3A A; 3AIA A; 3L8U A; 1P9P A; 3GYQ A; 2QWV A; 3KY7 A; 1X7O A; 3KTY A; 3ONP A; 1X7P A; 3DCM X; 3E5Y A; 1MXI A; 2QMM A; 2I6D A; 4H3Z A; 4H3Y A; 2Z0Y A; 1K3R A; 1NXZ A; 3NK7 A; 1V6Z A; 3AI9 X; 1UAM A; 1VHK A; 1GZ0 A; 1VHY A; 1ZJR A; 4CNF B; 3AXZ A; 3QUV A; 4IG6 A; 1UAJ A; 1V2X A; 2HA8 A; 3NK6 A; 4FAK A; 2YY8 A; 1O6D A; 3IC6 A; 1J85 A; 4CNE B; 3IEF A; 2CX8 A; 3KNU A; 4E8B A; 1TO0 A; 1UAL A; 3N4J A; 1NS5 A; 1UAK A; 1VH0 A; 3N4K A; 4CNG B;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
