3E5Y | KnotProt

Genus: 51

Knot K +3₁

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	80-121	42	1-79, 122-156			79	35	knot

Chain Sequence

MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				3.1	79-122	44	1-78, 123-156			78	34	knot
view details				2.1	76-119	44	1-75	125-156	120-124	75	32	slipknot

sequence length	156
structure length	156
publication title	Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei rcsb
molecule tags	Transferase
molecule keywords	TrmH family RNA methyltransferase
source organism	Burkholderia pseudomallei 305
total genus	Genus: 51
ec nomenclature
pdb deposition date	2008-08-14
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00588	SpoU_methylase	SpoU rRNA Methylase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	3e5yA00

4CNEB 3AIAA 3N4JA 1V2XA 1TO0A 3ONPA 1UAJA 1VHYA 3N4KA 1V6ZA 3GYQA 4CNGB 2O3AA 3IEFA 1UAKA 1MXIA 3ILKA 3L8UA 2I6DA 1O6DA 1NXZA 1X7OA 3DCMX 2QMMA 2CX8A 4H3YA 3KY7A 4IG6A 1UALA 1VHKA 3NK7A 2Z0YA 1J85A 2YY8A 1K3RA 1VH0A 4FAKA 1UAMA 3QUVA 1NS5A 1X7PA 3AI9X 3NK6A 4CNFB 4E8BA 3IC6A 1ZJRA 3E5YA 1GZ0A 3KTYA 3KNUA 3AXZA 2QWVA 1P9PA 4H3ZA 2HA8A
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1UAL A;  1VHK A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A; 
#chains in the KnotProt database with same CATH topology
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1UAL A;  1VHK A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A; 
#chains in the KnotProt database with same CATH homology
 4CNE B;  3AIA A;  3N4J A;  1V2X A;  1TO0 A;  3ONP A;  1UAJ A;  1VHY A;  3N4K A;  1V6Z A;  3GYQ A;  4CNG B;  2O3A A;  3IEF A;  1UAK A;  1MXI A;  3ILK A;  3L8U A;  2I6D A;  1O6D A;  1NXZ A;  1X7O A;  3DCM X;  2QMM A;  2CX8 A;  4H3Y A;  3KY7 A;  4IG6 A;  1UAL A;  1VHK A;  3NK7 A;  2Z0Y A;  1J85 A;  2YY8 A;  1K3R A;  1VH0 A;  4FAK A;  1UAM A;  3QUV A;  1NS5 A;  1X7P A;  3AI9 X;  3NK6 A;  4CNF B;  4E8B A;  3IC6 A;  1ZJR A;  3E5Y A;  1GZ0 A;  3KTY A;  3KNU A;  3AXZ A;  2QWV A;  1P9P A;  4H3Z A;  2HA8 A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3E5YA

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁