1X7PA

Crystal structure of the spou methyltransferase avirb from streptomyces viridochromogenes in complex with the cofactor adomet
Genus: 86
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 192-232 41 1-191, 233-265 191 33 knot
Chain Sequence
RNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAILYEAVRQRISGR
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 191-233 43 1-190, 234-265 190 32 knot
view details
2.1 190-230 41 1-189 236-265 231-235 189 30 slipknot
view details
3.1 192-234 43 235-265 1-190 191-191 190 30 slipknot
view details
3.1 193-242 50 1-191, 252-265 192-192, 243-251 191 14 slipknot
view details
3.1 193-236 44 1-191, 242-265 192-192, 237-241 191 24 slipknot
view details
3.1 193-252 60 253-265 1-191 192-192 191 12 slipknot
view details
2.1 194-253 60 1-192, 263-265 193-193, 254-262 192 3 slipknot
sequence length 265
structure length 265
publication title Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes
pubmed doi rcsb
molecule tags Transferase
molecule keywords rRNA methyltransferase
source organism Streptomyces viridochromogenes
total genus Genus: 86
ec nomenclature ec 2.1.1.208: 23S rRNA (uridine(2479)-2'-O)-methyltransferase.
pdb deposition date 2004-08-16
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 1x7pA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1x7pA02
3E5YA 3KTYA 2QMMA 3IC6A 3N4KA 3GYQA 1K3RA 3AIAA 4FAKA 3IEFA 3L8UA 4E8BA 2CX8A 1O6DA 2O3AA 3KY7A 3DCMX 4CNEB 3ONPA 1GZ0A 3ILKA 4H3ZA 3NK6A 3AI9X 1VHKA 2Z0YA 4IG6A 3N4JA 4H3YA 1V6ZA 1UAJA 4CNGB 1V2XA 1UALA 1VHYA 1NS5A 3AXZA 1NXZA 1X7PA 1P9PA 1X7OA 1UAMA 1UAKA 2HA8A 3QUVA 4CNFB 1TO0A 2QWVA 1J85A 2YY8A 1VH0A 1ZJRA 3KNUA 2I6DA 1MXIA 3NK7A
chains in the KnotProt database with same CATH superfamily
3E5YA 3KTYA 2QMMA 3IC6A 3N4KA 3GYQA 1K3RA 3AIAA 4FAKA 3IEFA 3L8UA 4E8BA 2CX8A 1O6DA 2O3AA 3KY7A 3DCMX 4CNEB 3ONPA 1GZ0A 3ILKA 4H3ZA 3NK6A 3AI9X 1VHKA 2Z0YA 4IG6A 3N4JA 4H3YA 1V6ZA 1UAJA 4CNGB 1V2XA 1UALA 1VHYA 1NS5A 3AXZA 1NXZA 1X7PA 1P9PA 1X7OA 1UAMA 1UAKA 2HA8A 3QUVA 4CNFB 1TO0A 2QWVA 1J85A 2YY8A 1VH0A 1ZJRA 3KNUA 2I6DA 1MXIA 3NK7A
chains in the KnotProt database with same CATH topology
3E5YA 3KTYA 2QMMA 3IC6A 3N4KA 3GYQA 1K3RA 3AIAA 4FAKA 3IEFA 3L8UA 4E8BA 2CX8A 1O6DA 2O3AA 3KY7A 3DCMX 4CNEB 3ONPA 1GZ0A 3ILKA 4H3ZA 3NK6A 3AI9X 1VHKA 2Z0YA 4IG6A 3N4JA 4H3YA 1V6ZA 1UAJA 4CNGB 1V2XA 1UALA 1VHYA 1NS5A 3AXZA 1NXZA 1X7PA 1P9PA 1X7OA 1UAMA 1UAKA 2HA8A 3QUVA 4CNFB 1TO0A 2QWVA 1J85A 2YY8A 1VH0A 1ZJRA 3KNUA 2I6DA 1MXIA 3NK7A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 3E5Y A;  3KTY A;  2QMM A;  3IC6 A;  3N4K A;  3GYQ A;  1K3R A;  3AIA A;  4FAK A;  3IEF A;  3L8U A;  4E8B A;  2CX8 A;  1O6D A;  2O3A A;  3KY7 A;  3DCM X;  4CNE B;  3ONP A;  1GZ0 A;  3ILK A;  4H3Z A;  3NK6 A;  3AI9 X;  1VHK A;  2Z0Y A;  4IG6 A;  3N4J A;  4H3Y A;  1V6Z A;  1UAJ A;  4CNG B;  1V2X A;  1UAL A;  1VHY A;  1NS5 A;  3AXZ A;  1NXZ A;  1X7P A;  1P9P A;  1X7O A;  1UAM A;  1UAK A;  2HA8 A;  3QUV A;  4CNF B;  1TO0 A;  2QWV A;  1J85 A;  2YY8 A;  1VH0 A;  1ZJR A;  3KNU A;  2I6D A;  1MXI A;  3NK7 A; 
#chains in the KnotProt database with same CATH topology
 3E5Y A;  3KTY A;  2QMM A;  3IC6 A;  3N4K A;  3GYQ A;  1K3R A;  3AIA A;  4FAK A;  3IEF A;  3L8U A;  4E8B A;  2CX8 A;  1O6D A;  2O3A A;  3KY7 A;  3DCM X;  4CNE B;  3ONP A;  1GZ0 A;  3ILK A;  4H3Z A;  3NK6 A;  3AI9 X;  1VHK A;  2Z0Y A;  4IG6 A;  3N4J A;  4H3Y A;  1V6Z A;  1UAJ A;  4CNG B;  1V2X A;  1UAL A;  1VHY A;  1NS5 A;  3AXZ A;  1NXZ A;  1X7P A;  1P9P A;  1X7O A;  1UAM A;  1UAK A;  2HA8 A;  3QUV A;  4CNF B;  1TO0 A;  2QWV A;  1J85 A;  2YY8 A;  1VH0 A;  1ZJR A;  3KNU A;  2I6D A;  1MXI A;  3NK7 A; 
#chains in the KnotProt database with same CATH homology
 3E5Y A;  3KTY A;  2QMM A;  3IC6 A;  3N4K A;  3GYQ A;  1K3R A;  3AIA A;  4FAK A;  3IEF A;  3L8U A;  4E8B A;  2CX8 A;  1O6D A;  2O3A A;  3KY7 A;  3DCM X;  4CNE B;  3ONP A;  1GZ0 A;  3ILK A;  4H3Z A;  3NK6 A;  3AI9 X;  1VHK A;  2Z0Y A;  4IG6 A;  3N4J A;  4H3Y A;  1V6Z A;  1UAJ A;  4CNG B;  1V2X A;  1UAL A;  1VHY A;  1NS5 A;  3AXZ A;  1NXZ A;  1X7P A;  1P9P A;  1X7O A;  1UAM A;  1UAK A;  2HA8 A;  3QUV A;  4CNF B;  1TO0 A;  2QWV A;  1J85 A;  2YY8 A;  1VH0 A;  1ZJR A;  3KNU A;  2I6D A;  1MXI A;  3NK7 A;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling