| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 80-124 | 45 | 1-79, 125-175 | 79 | 51 | knot |
Chain Sequence |
MIVVLRLGHRPE-DKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEFTGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKIKIVPQARGKKVVEVQ
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 77-124 | 48 | 1-76, 125-174 | 76 | 50 | knot | ||||
| view details |
|
3.1 | 78-129 | 52 | 1-76, 147-174 | 77-77, 130-146 | 76 | 28 | slipknot |
| sequence length |
175
|
| structure length |
174
|
| publication title |
Crystal structure and mutational study of a unique SpoU family archaeal methylase that forms 2'-O-methylcytidine at position 56 of tRNA
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
UPF0106 protein PH0461
|
| source organism |
Pyrococcus horikoshii
|
| missing residues |
13
|
| total genus |
 Genus: 54
|
| ec nomenclature |
ec
2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase. |
| pdb deposition date | 2007-04-27 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01994 | Trm56 | tRNA ribose 2'-O-methyltransferase, aTrm56 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1V6Z A; 1UAM A; 3AXZ A; 1X7O A; 2O3A A; 2QWV A; 4CNG B; 1V2X A; 1MXI A; 3KNU A; 3NK6 A; 1NS5 A; 1X7P A; 1NXZ A; 1VH0 A; 3GYQ A; 3N4J A; 1GZ0 A; 1TO0 A; 4IG6 A; 1UAL A; 4H3Y A; 3KY7 A; 4E8B A; 1UAJ A; 3ONP A; 3N4K A; 3AIA A; 3QUV A; 4H3Z A; 1P9P A; 1K3R A; 2HA8 A; 3L8U A; 4CNF B; 3E5Y A; 4CNE B; 1VHK A; 1O6D A; 1UAK A; 2QMM A; 3DCM X; 3KTY A; 3ILK A; 2I6D A; 1ZJR A; 3AI9 X; 3IC6 A; 3NK7 A; 2Z0Y A; 2YY8 A; 1J85 A; 1VHY A; 3IEF A; 2CX8 A; 4FAK A; #chains in the KnotProt database with same CATH topology 1V6Z A; 1UAM A; 3AXZ A; 1X7O A; 2O3A A; 2QWV A; 4CNG B; 1V2X A; 1MXI A; 3KNU A; 3NK6 A; 1NS5 A; 1X7P A; 1NXZ A; 1VH0 A; 3GYQ A; 3N4J A; 1GZ0 A; 1TO0 A; 4IG6 A; 1UAL A; 4H3Y A; 3KY7 A; 4E8B A; 1UAJ A; 3ONP A; 3N4K A; 3AIA A; 3QUV A; 4H3Z A; 1P9P A; 1K3R A; 2HA8 A; 3L8U A; 4CNF B; 3E5Y A; 4CNE B; 1VHK A; 1O6D A; 1UAK A; 2QMM A; 3DCM X; 3KTY A; 3ILK A; 2I6D A; 1ZJR A; 3AI9 X; 3IC6 A; 3NK7 A; 2Z0Y A; 2YY8 A; 1J85 A; 1VHY A; 3IEF A; 2CX8 A; 4FAK A; #chains in the KnotProt database with same CATH homology 1V6Z A; 1UAM A; 3AXZ A; 1X7O A; 2O3A A; 2QWV A; 4CNG B; 1V2X A; 1MXI A; 3KNU A; 3NK6 A; 1NS5 A; 1X7P A; 1NXZ A; 1VH0 A; 3GYQ A; 3N4J A; 1GZ0 A; 1TO0 A; 4IG6 A; 1UAL A; 4H3Y A; 3KY7 A; 4E8B A; 1UAJ A; 3ONP A; 3N4K A; 3AIA A; 3QUV A; 4H3Z A; 1P9P A; 1K3R A; 2HA8 A; 3L8U A; 4CNF B; 3E5Y A; 4CNE B; 1VHK A; 1O6D A; 1UAK A; 2QMM A; 3DCM X; 3KTY A; 3ILK A; 2I6D A; 1ZJR A; 3AI9 X; 3IC6 A; 3NK7 A; 2Z0Y A; 2YY8 A; 1J85 A; 1VHY A; 3IEF A; 2CX8 A; 4FAK A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
