1V6ZA

Crystal structure of tt1573 from thermus thermophilus
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 156-200 45 1-155, 201-227 155 27 knot
Chain Sequence
RPHRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 156-201 46 1-155, 202-227 155 26 knot
view details
2.1 153-198 46 1-152 204-227 199-203 152 24 slipknot
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2.1 157-206 50 1-155, 215-227 156-156, 207-214 155 13 slipknot
view details
2.1 157-214 58 1-155, 217-227 156-156, 215-216 155 11 slipknot
view details
2.1 157-217 61 218-227 1-155 156-156 155 9 slipknot
sequence length 227
structure length 227
publication title Crystal structure of TT1573 from Thermus thermophilus
rcsb
molecule tags Transferase
molecule keywords hypothetical protein TTHA0657
total genus Genus: 68
ec nomenclature
pdb deposition date 2003-12-05
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1v6zA01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1v6zA02
3IC6A 4FAKA 4IG6A 4CNEB 1TO0A 3KY7A 3AI9X 4CNFB 2HA8A 2QWVA 3L8UA 3GYQA 3NK7A 1NXZA 3NK6A 3N4KA 1P9PA 1MXIA 1UAJA 3QUVA 1X7PA 1UAMA 2I6DA 2QMMA 2O3AA 1GZ0A 2YY8A 1K3RA 3IEFA 3E5YA 4E8BA 1X7OA 3AXZA 1V2XA 1O6DA 4H3ZA 4CNGB 1UALA 3N4JA 3KW2A 4H3YA 3ILKA 1ZJRA 3KTYA 1VH0A 3KNUA 1V6ZA 2Z0YA 1VHKA 3DCMX 1VHYA 2CX8A 3AIAA 1J85A 1UAKA 3ONPA 1NS5A
chains in the KnotProt database with same CATH superfamily
3IC6A 4FAKA 4IG6A 4CNEB 1TO0A 3KY7A 3AI9X 4CNFB 2HA8A 2QWVA 3L8UA 3GYQA 3NK7A 1NXZA 3NK6A 3N4KA 1P9PA 1MXIA 1UAJA 3QUVA 1X7PA 1UAMA 2I6DA 2QMMA 2O3AA 1GZ0A 2YY8A 1K3RA 3IEFA 3E5YA 4E8BA 1X7OA 3AXZA 1V2XA 1O6DA 4H3ZA 4CNGB 1UALA 3N4JA 3KW2A 4H3YA 3ILKA 1ZJRA 3KTYA 1VH0A 3KNUA 1V6ZA 2Z0YA 1VHKA 3DCMX 1VHYA 2CX8A 3AIAA 1J85A 1UAKA 3ONPA 1NS5A
chains in the KnotProt database with same CATH topology
3IC6A 4FAKA 4IG6A 4CNEB 1TO0A 3KY7A 3AI9X 4CNFB 2HA8A 2QWVA 3L8UA 3GYQA 3NK7A 1NXZA 3NK6A 3N4KA 1P9PA 1MXIA 1UAJA 3QUVA 1X7PA 1UAMA 2I6DA 2QMMA 2O3AA 1GZ0A 2YY8A 1K3RA 3IEFA 3E5YA 4E8BA 1X7OA 3AXZA 1V2XA 1O6DA 4H3ZA 4CNGB 1UALA 3N4JA 3KW2A 4H3YA 3ILKA 1ZJRA 3KTYA 1VH0A 3KNUA 1V6ZA 2Z0YA 1VHKA 3DCMX 1VHYA 2CX8A 3AIAA 1J85A 1UAKA 3ONPA 1NS5A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3IC6 A;  4FAK A;  4IG6 A;  4CNE B;  1TO0 A;  3KY7 A;  3AI9 X;  4CNF B;  2HA8 A;  2QWV A;  3L8U A;  3GYQ A;  3NK7 A;  1NXZ A;  3NK6 A;  3N4K A;  1P9P A;  1MXI A;  1UAJ A;  3QUV A;  1X7P A;  1UAM A;  2I6D A;  2QMM A;  2O3A A;  1GZ0 A;  2YY8 A;  1K3R A;  3IEF A;  3E5Y A;  4E8B A;  1X7O A;  3AXZ A;  1V2X A;  1O6D A;  4H3Z A;  4CNG B;  1UAL A;  3N4J A;  3KW2 A;  4H3Y A;  3ILK A;  1ZJR A;  3KTY A;  1VH0 A;  3KNU A;  1V6Z A;  2Z0Y A;  1VHK A;  3DCM X;  1VHY A;  2CX8 A;  3AIA A;  1J85 A;  1UAK A;  3ONP A;  1NS5 A; 
#chains in the KnotProt database with same CATH topology
 3IC6 A;  4FAK A;  4IG6 A;  4CNE B;  1TO0 A;  3KY7 A;  3AI9 X;  4CNF B;  2HA8 A;  2QWV A;  3L8U A;  3GYQ A;  3NK7 A;  1NXZ A;  3NK6 A;  3N4K A;  1P9P A;  1MXI A;  1UAJ A;  3QUV A;  1X7P A;  1UAM A;  2I6D A;  2QMM A;  2O3A A;  1GZ0 A;  2YY8 A;  1K3R A;  3IEF A;  3E5Y A;  4E8B A;  1X7O A;  3AXZ A;  1V2X A;  1O6D A;  4H3Z A;  4CNG B;  1UAL A;  3N4J A;  3KW2 A;  4H3Y A;  3ILK A;  1ZJR A;  3KTY A;  1VH0 A;  3KNU A;  1V6Z A;  2Z0Y A;  1VHK A;  3DCM X;  1VHY A;  2CX8 A;  3AIA A;  1J85 A;  1UAK A;  3ONP A;  1NS5 A; 
#chains in the KnotProt database with same CATH homology
 3IC6 A;  4FAK A;  4IG6 A;  4CNE B;  1TO0 A;  3KY7 A;  3AI9 X;  4CNF B;  2HA8 A;  2QWV A;  3L8U A;  3GYQ A;  3NK7 A;  1NXZ A;  3NK6 A;  3N4K A;  1P9P A;  1MXI A;  1UAJ A;  3QUV A;  1X7P A;  1UAM A;  2I6D A;  2QMM A;  2O3A A;  1GZ0 A;  2YY8 A;  1K3R A;  3IEF A;  3E5Y A;  4E8B A;  1X7O A;  3AXZ A;  1V2X A;  1O6D A;  4H3Z A;  4CNG B;  1UAL A;  3N4J A;  3KW2 A;  4H3Y A;  3ILK A;  1ZJR A;  3KTY A;  1VH0 A;  3KNU A;  1V6Z A;  2Z0Y A;  1VHK A;  3DCM X;  1VHY A;  2CX8 A;  3AIA A;  1J85 A;  1UAK A;  3ONP A;  1NS5 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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