3AXZA

Crystal structure of haemophilus influenzae trmd in complex with adenosine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 92-136 45 1-91, 137-252 91 116 knot
Chain Sequence
VPRGSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL-----------ADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 92-137 46 1-91, 138-241 91 104 knot
sequence length 252
structure length 241
publication title Differentiating analogous tRNA methyltransferases by fragments of the methyl donor.
pubmed doi rcsb
molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
source organism Haemophilus influenzae
missing residues 167-177
total genus Genus: 68
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2011-04-21
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3axzA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3axzA01
1ZJRA 4CNGB 3E5YA 1J85A 3ILKA 2Z0YA 1NXZA 4IG6A 3NK7A 1NS5A 3L8UA 1X7OA 3IC6A 1V6ZA 1UAMA 1GZ0A 1K3RA 2I6DA 3N4KA 4E8BA 4CNFB 2QWVA 3ONPA 3KY7A 1MXIA 1UALA 1V2XA 1X7PA 1P9PA 3GYQA 1UAJA 4H3ZA 3AI9X 2HA8A 3NK6A 2QMMA 3AIAA 4CNEB 3AXZA 3DCMX 1UAKA 3KTYA 1VHKA 1VHYA 1O6DA 3IEFA 2YY8A 4FAKA 2CX8A 1VH0A 3N4JA 2O3AA 3KNUA 1TO0A 3QUVA 4H3YA
chains in the KnotProt database with same CATH superfamily
1ZJRA 4CNGB 3E5YA 1J85A 3ILKA 2Z0YA 1NXZA 4IG6A 3NK7A 1NS5A 3L8UA 1X7OA 3IC6A 1V6ZA 1UAMA 1GZ0A 1K3RA 2I6DA 3N4KA 4E8BA 4CNFB 2QWVA 3ONPA 3KY7A 1MXIA 1UALA 1V2XA 1X7PA 1P9PA 3GYQA 1UAJA 4H3ZA 3AI9X 2HA8A 3NK6A 2QMMA 3AIAA 4CNEB 3AXZA 3DCMX 1UAKA 3KTYA 1VHKA 1VHYA 1O6DA 3IEFA 2YY8A 4FAKA 2CX8A 1VH0A 3N4JA 2O3AA 3KNUA 1TO0A 3QUVA 4H3YA
chains in the KnotProt database with same CATH topology
1ZJRA 4CNGB 3E5YA 1J85A 3ILKA 2Z0YA 1NXZA 4IG6A 3NK7A 1NS5A 3L8UA 1X7OA 3IC6A 1V6ZA 1UAMA 1GZ0A 1K3RA 2I6DA 3N4KA 4E8BA 4CNFB 2QWVA 3ONPA 3KY7A 1MXIA 1UALA 1V2XA 1X7PA 1P9PA 3GYQA 1UAJA 4H3ZA 3AI9X 2HA8A 3NK6A 2QMMA 3AIAA 4CNEB 3AXZA 3DCMX 1UAKA 3KTYA 1VHKA 1VHYA 1O6DA 3IEFA 2YY8A 4FAKA 2CX8A 1VH0A 3N4JA 2O3AA 3KNUA 1TO0A 3QUVA 4H3YA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1ZJR A;  4CNG B;  3E5Y A;  1J85 A;  3ILK A;  2Z0Y A;  1NXZ A;  4IG6 A;  3NK7 A;  1NS5 A;  3L8U A;  1X7O A;  3IC6 A;  1V6Z A;  1UAM A;  1GZ0 A;  1K3R A;  2I6D A;  3N4K A;  4E8B A;  4CNF B;  2QWV A;  3ONP A;  3KY7 A;  1MXI A;  1UAL A;  1V2X A;  1X7P A;  1P9P A;  3GYQ A;  1UAJ A;  4H3Z A;  3AI9 X;  2HA8 A;  3NK6 A;  2QMM A;  3AIA A;  4CNE B;  3AXZ A;  3DCM X;  1UAK A;  3KTY A;  1VHK A;  1VHY A;  1O6D A;  3IEF A;  2YY8 A;  4FAK A;  2CX8 A;  1VH0 A;  3N4J A;  2O3A A;  3KNU A;  1TO0 A;  3QUV A;  4H3Y A; 
#chains in the KnotProt database with same CATH topology
 1ZJR A;  4CNG B;  3E5Y A;  1J85 A;  3ILK A;  2Z0Y A;  1NXZ A;  4IG6 A;  3NK7 A;  1NS5 A;  3L8U A;  1X7O A;  3IC6 A;  1V6Z A;  1UAM A;  1GZ0 A;  1K3R A;  2I6D A;  3N4K A;  4E8B A;  4CNF B;  2QWV A;  3ONP A;  3KY7 A;  1MXI A;  1UAL A;  1V2X A;  1X7P A;  1P9P A;  3GYQ A;  1UAJ A;  4H3Z A;  3AI9 X;  2HA8 A;  3NK6 A;  2QMM A;  3AIA A;  4CNE B;  3AXZ A;  3DCM X;  1UAK A;  3KTY A;  1VHK A;  1VHY A;  1O6D A;  3IEF A;  2YY8 A;  4FAK A;  2CX8 A;  1VH0 A;  3N4J A;  2O3A A;  3KNU A;  1TO0 A;  3QUV A;  4H3Y A; 
#chains in the KnotProt database with same CATH homology
 1ZJR A;  4CNG B;  3E5Y A;  1J85 A;  3ILK A;  2Z0Y A;  1NXZ A;  4IG6 A;  3NK7 A;  1NS5 A;  3L8U A;  1X7O A;  3IC6 A;  1V6Z A;  1UAM A;  1GZ0 A;  1K3R A;  2I6D A;  3N4K A;  4E8B A;  4CNF B;  2QWV A;  3ONP A;  3KY7 A;  1MXI A;  1UAL A;  1V2X A;  1X7P A;  1P9P A;  3GYQ A;  1UAJ A;  4H3Z A;  3AI9 X;  2HA8 A;  3NK6 A;  2QMM A;  3AIA A;  4CNE B;  3AXZ A;  3DCM X;  1UAK A;  3KTY A;  1VHK A;  1VHY A;  1O6D A;  3IEF A;  2YY8 A;  4FAK A;  2CX8 A;  1VH0 A;  3N4J A;  2O3A A;  3KNU A;  1TO0 A;  3QUV A;  4H3Y A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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