3ONPA

Crystal structure of trna/rrna methyltransferase spou from rhodobacter sphaeroides
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 76-130 55 1-75, 131-159 75 29 knot
Chain Sequence
IEPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDCDYVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 77-133 57 1-76, 134-159 76 26 knot
view details
2.1 57-129 73 1-56 135-159 130-134 56 25 slipknot
view details
3.1 75-131 57 1-74 149-159 132-148 74 11 slipknot
sequence length 159
structure length 159
publication title Crystal Structure of tRNA/rRNA Methyltransferase SpoU from Rhodobacter sphaeroides
rcsb
molecule tags Transferase
molecule keywords tRNA/rRNA methyltransferase (SpoU)
source organism Rhodobacter sphaeroides
total genus Genus: 49
ec nomenclature
pdb deposition date 2010-08-30
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3onpA00
4CNGB 1VHKA 2QMMA 3AI9X 1UALA 2QWVA 4E8BA 3ILKA 1ZJRA 1V6ZA 3GYQA 4H3ZA 4CNEB 3QUVA 1P9PA 3NK7A 4H3YA 1V2XA 1VHYA 3KNUA 1J85A 4CNFB 3KTYA 1VH0A 2Z0YA 2HA8A 4FAKA 3DCMX 2O3AA 2CX8A 1GZ0A 3IC6A 1NXZA 4IG6A 3N4KA 1X7OA 1UAJA 3AIAA 1K3RA 3L8UA 1TO0A 2YY8A 1X7PA 1UAMA 3KY7A 1MXIA 1O6DA 1NS5A 1UAKA 3N4JA 3NK6A 3AXZA 3IEFA 3E5YA 3ONPA 2I6DA
chains in the KnotProt database with same CATH superfamily
4CNGB 1VHKA 2QMMA 3AI9X 1UALA 2QWVA 4E8BA 3ILKA 1ZJRA 1V6ZA 3GYQA 4H3ZA 4CNEB 3QUVA 1P9PA 3NK7A 4H3YA 1V2XA 1VHYA 3KNUA 1J85A 4CNFB 3KTYA 1VH0A 2Z0YA 2HA8A 4FAKA 3DCMX 2O3AA 2CX8A 1GZ0A 3IC6A 1NXZA 4IG6A 3N4KA 1X7OA 1UAJA 3AIAA 1K3RA 3L8UA 1TO0A 2YY8A 1X7PA 1UAMA 3KY7A 1MXIA 1O6DA 1NS5A 1UAKA 3N4JA 3NK6A 3AXZA 3IEFA 3E5YA 3ONPA 2I6DA
chains in the KnotProt database with same CATH topology
4CNGB 1VHKA 2QMMA 3AI9X 1UALA 2QWVA 4E8BA 3ILKA 1ZJRA 1V6ZA 3GYQA 4H3ZA 4CNEB 3QUVA 1P9PA 3NK7A 4H3YA 1V2XA 1VHYA 3KNUA 1J85A 4CNFB 3KTYA 1VH0A 2Z0YA 2HA8A 4FAKA 3DCMX 2O3AA 2CX8A 1GZ0A 3IC6A 1NXZA 4IG6A 3N4KA 1X7OA 1UAJA 3AIAA 1K3RA 3L8UA 1TO0A 2YY8A 1X7PA 1UAMA 3KY7A 1MXIA 1O6DA 1NS5A 1UAKA 3N4JA 3NK6A 3AXZA 3IEFA 3E5YA 3ONPA 2I6DA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 4CNG B;  1VHK A;  2QMM A;  3AI9 X;  1UAL A;  2QWV A;  4E8B A;  3ILK A;  1ZJR A;  1V6Z A;  3GYQ A;  4H3Z A;  4CNE B;  3QUV A;  1P9P A;  3NK7 A;  4H3Y A;  1V2X A;  1VHY A;  3KNU A;  1J85 A;  4CNF B;  3KTY A;  1VH0 A;  2Z0Y A;  2HA8 A;  4FAK A;  3DCM X;  2O3A A;  2CX8 A;  1GZ0 A;  3IC6 A;  1NXZ A;  4IG6 A;  3N4K A;  1X7O A;  1UAJ A;  3AIA A;  1K3R A;  3L8U A;  1TO0 A;  2YY8 A;  1X7P A;  1UAM A;  3KY7 A;  1MXI A;  1O6D A;  1NS5 A;  1UAK A;  3N4J A;  3NK6 A;  3AXZ A;  3IEF A;  3E5Y A;  3ONP A;  2I6D A; 
#chains in the KnotProt database with same CATH topology
 4CNG B;  1VHK A;  2QMM A;  3AI9 X;  1UAL A;  2QWV A;  4E8B A;  3ILK A;  1ZJR A;  1V6Z A;  3GYQ A;  4H3Z A;  4CNE B;  3QUV A;  1P9P A;  3NK7 A;  4H3Y A;  1V2X A;  1VHY A;  3KNU A;  1J85 A;  4CNF B;  3KTY A;  1VH0 A;  2Z0Y A;  2HA8 A;  4FAK A;  3DCM X;  2O3A A;  2CX8 A;  1GZ0 A;  3IC6 A;  1NXZ A;  4IG6 A;  3N4K A;  1X7O A;  1UAJ A;  3AIA A;  1K3R A;  3L8U A;  1TO0 A;  2YY8 A;  1X7P A;  1UAM A;  3KY7 A;  1MXI A;  1O6D A;  1NS5 A;  1UAK A;  3N4J A;  3NK6 A;  3AXZ A;  3IEF A;  3E5Y A;  3ONP A;  2I6D A; 
#chains in the KnotProt database with same CATH homology
 4CNG B;  1VHK A;  2QMM A;  3AI9 X;  1UAL A;  2QWV A;  4E8B A;  3ILK A;  1ZJR A;  1V6Z A;  3GYQ A;  4H3Z A;  4CNE B;  3QUV A;  1P9P A;  3NK7 A;  4H3Y A;  1V2X A;  1VHY A;  3KNU A;  1J85 A;  4CNF B;  3KTY A;  1VH0 A;  2Z0Y A;  2HA8 A;  4FAK A;  3DCM X;  2O3A A;  2CX8 A;  1GZ0 A;  3IC6 A;  1NXZ A;  4IG6 A;  3N4K A;  1X7O A;  1UAJ A;  3AIA A;  1K3R A;  3L8U A;  1TO0 A;  2YY8 A;  1X7P A;  1UAM A;  3KY7 A;  1MXI A;  1O6D A;  1NS5 A;  1UAK A;  3N4J A;  3NK6 A;  3AXZ A;  3IEF A;  3E5Y A;  3ONP A;  2I6D A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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