3IC6A

Crystal structure of putative methylase family protein from neisseria gonorrhoeae
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 55
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 105-159 55 1-104, 160-217 104 58 knot
Chain Sequence
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRR--TAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQHA--ATHEQIKGMLAHMESV
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 105-158 54 1-104, 159-213 104 55 knot
view details
2.1 101-154 54 1-100 160-213 155-159 100 54 slipknot
view details
2.1 106-166 61 1-104, 177-213 105-105, 167-176 104 37 slipknot
view details
3.1 107-186 80 1-104, 199-213 105-106, 187-198 104 15 slipknot
sequence length 217
structure length 213
publication title Crystal structure of putative methylase family protein from Neisseria gonorrhoeae
rcsb
molecule tags Structural genomics, unknown function
molecule keywords Putative methylase family protein
source organism Neisseria gonorrhoeae fa 1090
missing residues 112-113, 198-199
total genus Genus: 55
ec nomenclature
pdb deposition date 2009-07-17
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ic6A01
2Z0YA 1NS5A 1J85A 3KY7A 3ONPA 2CX8A 3DCMX 1O6DA 1V6ZA 4H3ZA 1VH0A 3N4JA 4CNFB 1V2XA 1VHKA 1UAMA 1GZ0A 1UAJA 2I6DA 3IC6A 3AI9X 3NK6A 4CNGB 3L8UA 4FAKA 1P9PA 4E8BA 3ILKA 4H3YA 2HA8A 2O3AA 3NK7A 1MXIA 3IEFA 1X7OA 3AXZA 1K3RA 1VHYA 1ZJRA 2QWVA 3GYQA 1UAKA 3QUVA 4IG6A 3KNUA 1X7PA 3N4KA 1NXZA 1UALA 2QMMA 3AIAA 3E5YA 4CNEB 3KTYA 2YY8A 1TO0A
chains in the KnotProt database with same CATH superfamily
2Z0YA 1NS5A 1J85A 3KY7A 3ONPA 2CX8A 3DCMX 1O6DA 1V6ZA 4H3ZA 1VH0A 3N4JA 4CNFB 1V2XA 1VHKA 1UAMA 1GZ0A 1UAJA 2I6DA 3IC6A 3AI9X 3NK6A 4CNGB 3L8UA 4FAKA 1P9PA 4E8BA 3ILKA 4H3YA 2HA8A 2O3AA 3NK7A 1MXIA 3IEFA 1X7OA 3AXZA 1K3RA 1VHYA 1ZJRA 2QWVA 3GYQA 1UAKA 3QUVA 4IG6A 3KNUA 1X7PA 3N4KA 1NXZA 1UALA 2QMMA 3AIAA 3E5YA 4CNEB 3KTYA 2YY8A 1TO0A
chains in the KnotProt database with same CATH topology
2Z0YA 1NS5A 1J85A 3KY7A 3ONPA 2CX8A 3DCMX 1O6DA 1V6ZA 4H3ZA 1VH0A 3N4JA 4CNFB 1V2XA 1VHKA 1UAMA 1GZ0A 1UAJA 2I6DA 3IC6A 3AI9X 3NK6A 4CNGB 3L8UA 4FAKA 1P9PA 4E8BA 3ILKA 4H3YA 2HA8A 2O3AA 3NK7A 1MXIA 3IEFA 1X7OA 3AXZA 1K3RA 1VHYA 1ZJRA 2QWVA 3GYQA 1UAKA 3QUVA 4IG6A 3KNUA 1X7PA 3N4KA 1NXZA 1UALA 2QMMA 3AIAA 3E5YA 4CNEB 3KTYA 2YY8A 1TO0A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 2Z0Y A;  1NS5 A;  1J85 A;  3KY7 A;  3ONP A;  2CX8 A;  3DCM X;  1O6D A;  1V6Z A;  4H3Z A;  1VH0 A;  3N4J A;  4CNF B;  1V2X A;  1VHK A;  1UAM A;  1GZ0 A;  1UAJ A;  2I6D A;  3IC6 A;  3AI9 X;  3NK6 A;  4CNG B;  3L8U A;  4FAK A;  1P9P A;  4E8B A;  3ILK A;  4H3Y A;  2HA8 A;  2O3A A;  3NK7 A;  1MXI A;  3IEF A;  1X7O A;  3AXZ A;  1K3R A;  1VHY A;  1ZJR A;  2QWV A;  3GYQ A;  1UAK A;  3QUV A;  4IG6 A;  3KNU A;  1X7P A;  3N4K A;  1NXZ A;  1UAL A;  2QMM A;  3AIA A;  3E5Y A;  4CNE B;  3KTY A;  2YY8 A;  1TO0 A; 
#chains in the KnotProt database with same CATH topology
 2Z0Y A;  1NS5 A;  1J85 A;  3KY7 A;  3ONP A;  2CX8 A;  3DCM X;  1O6D A;  1V6Z A;  4H3Z A;  1VH0 A;  3N4J A;  4CNF B;  1V2X A;  1VHK A;  1UAM A;  1GZ0 A;  1UAJ A;  2I6D A;  3IC6 A;  3AI9 X;  3NK6 A;  4CNG B;  3L8U A;  4FAK A;  1P9P A;  4E8B A;  3ILK A;  4H3Y A;  2HA8 A;  2O3A A;  3NK7 A;  1MXI A;  3IEF A;  1X7O A;  3AXZ A;  1K3R A;  1VHY A;  1ZJR A;  2QWV A;  3GYQ A;  1UAK A;  3QUV A;  4IG6 A;  3KNU A;  1X7P A;  3N4K A;  1NXZ A;  1UAL A;  2QMM A;  3AIA A;  3E5Y A;  4CNE B;  3KTY A;  2YY8 A;  1TO0 A; 
#chains in the KnotProt database with same CATH homology
 2Z0Y A;  1NS5 A;  1J85 A;  3KY7 A;  3ONP A;  2CX8 A;  3DCM X;  1O6D A;  1V6Z A;  4H3Z A;  1VH0 A;  3N4J A;  4CNF B;  1V2X A;  1VHK A;  1UAM A;  1GZ0 A;  1UAJ A;  2I6D A;  3IC6 A;  3AI9 X;  3NK6 A;  4CNG B;  3L8U A;  4FAK A;  1P9P A;  4E8B A;  3ILK A;  4H3Y A;  2HA8 A;  2O3A A;  3NK7 A;  1MXI A;  3IEF A;  1X7O A;  3AXZ A;  1K3R A;  1VHY A;  1ZJR A;  2QWV A;  3GYQ A;  1UAK A;  3QUV A;  4IG6 A;  3KNU A;  1X7P A;  3N4K A;  1NXZ A;  1UAL A;  2QMM A;  3AIA A;  3E5Y A;  4CNE B;  3KTY A;  2YY8 A;  1TO0 A;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling