4FAKA

Crystal structure of orfx in complex with s-adenosylmethionine
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 79-128 50 1-78, 129-163 78 35 knot
Chain Sequence
AAEFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 78-129 52 1-77, 130-163 77 34 knot
view details
2.1 80-154 75 1-77, 161-163 78-79, 155-160 77 3 slipknot
view details
3.1 80-160 81 1-77, 163-163 78-79, 161-162 77 1 slipknot
sequence length 163
structure length 163
publication title Characterization of the Staphylococcus aureus rRNA Methyltransferase Encoded by orfX, the Gene Containing the Staphylococcal Chromosome Cassette mec (SCCmec) Insertion Site.
pubmed doi rcsb
molecule tags Transferase, ribosomal protein
molecule keywords Ribosomal RNA large subunit methyltransferase H
source organism Staphylococcus aureus
total genus Genus: 53
ec nomenclature ec 2.1.1.177: 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase.
pdb deposition date 2012-05-22
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4fakA00
3DCMX 4CNGB 1X7PA 1VHKA 1MXIA 2O3AA 2YY8A 4E8BA 2CX8A 1NS5A 4H3YA 4IG6A 1X7OA 3IEFA 3ILKA 1UAKA 3N4KA 1K3RA 4FAKA 1O6DA 4CNFB 2HA8A 1NXZA 1VHYA 3AXZA 1ZJRA 4CNEB 3IC6A 3NK6A 3L8UA 3ONPA 3NK7A 3AI9X 3KY7A 1UALA 1UAMA 3AIAA 1GZ0A 3N4JA 4H3ZA 1J85A 3GYQA 1V6ZA 1P9PA 1V2XA 2Z0YA 2I6DA 2QWVA 3KTYA 3KNUA 3QUVA 3E5YA 1VH0A 1TO0A 2QMMA 1UAJA
chains in the KnotProt database with same CATH superfamily
3DCMX 4CNGB 1X7PA 1VHKA 1MXIA 2O3AA 2YY8A 4E8BA 2CX8A 1NS5A 4H3YA 4IG6A 1X7OA 3IEFA 3ILKA 1UAKA 3N4KA 1K3RA 4FAKA 1O6DA 4CNFB 2HA8A 1NXZA 1VHYA 3AXZA 1ZJRA 4CNEB 3IC6A 3NK6A 3L8UA 3ONPA 3NK7A 3AI9X 3KY7A 1UALA 1UAMA 3AIAA 1GZ0A 3N4JA 4H3ZA 1J85A 3GYQA 1V6ZA 1P9PA 1V2XA 2Z0YA 2I6DA 2QWVA 3KTYA 3KNUA 3QUVA 3E5YA 1VH0A 1TO0A 2QMMA 1UAJA
chains in the KnotProt database with same CATH topology
3DCMX 4CNGB 1X7PA 1VHKA 1MXIA 2O3AA 2YY8A 4E8BA 2CX8A 1NS5A 4H3YA 4IG6A 1X7OA 3IEFA 3ILKA 1UAKA 3N4KA 1K3RA 4FAKA 1O6DA 4CNFB 2HA8A 1NXZA 1VHYA 3AXZA 1ZJRA 4CNEB 3IC6A 3NK6A 3L8UA 3ONPA 3NK7A 3AI9X 3KY7A 1UALA 1UAMA 3AIAA 1GZ0A 3N4JA 4H3ZA 1J85A 3GYQA 1V6ZA 1P9PA 1V2XA 2Z0YA 2I6DA 2QWVA 3KTYA 3KNUA 3QUVA 3E5YA 1VH0A 1TO0A 2QMMA 1UAJA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3DCM X;  4CNG B;  1X7P A;  1VHK A;  1MXI A;  2O3A A;  2YY8 A;  4E8B A;  2CX8 A;  1NS5 A;  4H3Y A;  4IG6 A;  1X7O A;  3IEF A;  3ILK A;  1UAK A;  3N4K A;  1K3R A;  4FAK A;  1O6D A;  4CNF B;  2HA8 A;  1NXZ A;  1VHY A;  3AXZ A;  1ZJR A;  4CNE B;  3IC6 A;  3NK6 A;  3L8U A;  3ONP A;  3NK7 A;  3AI9 X;  3KY7 A;  1UAL A;  1UAM A;  3AIA A;  1GZ0 A;  3N4J A;  4H3Z A;  1J85 A;  3GYQ A;  1V6Z A;  1P9P A;  1V2X A;  2Z0Y A;  2I6D A;  2QWV A;  3KTY A;  3KNU A;  3QUV A;  3E5Y A;  1VH0 A;  1TO0 A;  2QMM A;  1UAJ A; 
#chains in the KnotProt database with same CATH topology
 3DCM X;  4CNG B;  1X7P A;  1VHK A;  1MXI A;  2O3A A;  2YY8 A;  4E8B A;  2CX8 A;  1NS5 A;  4H3Y A;  4IG6 A;  1X7O A;  3IEF A;  3ILK A;  1UAK A;  3N4K A;  1K3R A;  4FAK A;  1O6D A;  4CNF B;  2HA8 A;  1NXZ A;  1VHY A;  3AXZ A;  1ZJR A;  4CNE B;  3IC6 A;  3NK6 A;  3L8U A;  3ONP A;  3NK7 A;  3AI9 X;  3KY7 A;  1UAL A;  1UAM A;  3AIA A;  1GZ0 A;  3N4J A;  4H3Z A;  1J85 A;  3GYQ A;  1V6Z A;  1P9P A;  1V2X A;  2Z0Y A;  2I6D A;  2QWV A;  3KTY A;  3KNU A;  3QUV A;  3E5Y A;  1VH0 A;  1TO0 A;  2QMM A;  1UAJ A; 
#chains in the KnotProt database with same CATH homology
 3DCM X;  4CNG B;  1X7P A;  1VHK A;  1MXI A;  2O3A A;  2YY8 A;  4E8B A;  2CX8 A;  1NS5 A;  4H3Y A;  4IG6 A;  1X7O A;  3IEF A;  3ILK A;  1UAK A;  3N4K A;  1K3R A;  4FAK A;  1O6D A;  4CNF B;  2HA8 A;  1NXZ A;  1VHY A;  3AXZ A;  1ZJR A;  4CNE B;  3IC6 A;  3NK6 A;  3L8U A;  3ONP A;  3NK7 A;  3AI9 X;  3KY7 A;  1UAL A;  1UAM A;  3AIA A;  1GZ0 A;  3N4J A;  4H3Z A;  1J85 A;  3GYQ A;  1V6Z A;  1P9P A;  1V2X A;  2Z0Y A;  2I6D A;  2QWV A;  3KTY A;  3KNU A;  3QUV A;  3E5Y A;  1VH0 A;  1TO0 A;  2QMM A;  1UAJ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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