| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 78-119 | 42 | 1-77, 120-155 | 77 | 36 | knot |
Chain Sequence |
MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFLESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYEAWRQLGYKGAVNL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 76-137 | 62 | 1-75, 138-156 | 75 | 19 | knot | ||||
| view details |
|
3.1 | 76-120 | 45 | 1-75 | 138-156 | 121-137 | 75 | 19 | slipknot | ||
| view details |
 |
2.1 | 80-122 | 43 | 123-156 | 1-75 | 76-79 | 75 | 33 | slipknot |
| sequence length |
156
|
| structure length |
156
|
| publication title |
Structure of the YibK methyltransferase from Haemophilus influenzae
(HI0766): A cofactor bound at a site formed by a knot
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
YibK
|
| source organism |
Haemophilus influenzae rd
|
| total genus |
 Genus: 44
|
| ec nomenclature |
ec
2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase. |
| pdb deposition date | 2001-05-20 |
| KnotProt deposition date | 2018-08-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1O6D A; 1J85 A; 1VH0 A; 3NK7 A; 3KNU A; 3ONP A; 3AI9 X; 3IC6 A; 2QMM A; 3AIA A; 4FAK A; 4IG6 A; 1UAM A; 1VHK A; 3IEF A; 1NS5 A; 2O3A A; 2YY8 A; 1UAL A; 2HA8 A; 3KTY A; 1TO0 A; 1X7P A; 3DCM X; 4CNE B; 1GZ0 A; 4E8B A; 4CNF B; 3L8U A; 1X7O A; 3AXZ A; 1V6Z A; 1ZJR A; 1UAK A; 2CX8 A; 2I6D A; 3GYQ A; 4H3Y A; 1NXZ A; 3NK6 A; 2Z0Y A; 1K3R A; 3QUV A; 2QWV A; 1UAJ A; 3ILK A; 4CNG B; 3KY7 A; 3N4J A; 3N4K A; 1MXI A; 1V2X A; 1P9P A; 4H3Z A; 1VHY A; 3E5Y A; #chains in the KnotProt database with same CATH topology 1O6D A; 1J85 A; 1VH0 A; 3NK7 A; 3KNU A; 3ONP A; 3AI9 X; 3IC6 A; 2QMM A; 3AIA A; 4FAK A; 4IG6 A; 1UAM A; 1VHK A; 3IEF A; 1NS5 A; 2O3A A; 2YY8 A; 1UAL A; 2HA8 A; 3KTY A; 1TO0 A; 1X7P A; 3DCM X; 4CNE B; 1GZ0 A; 4E8B A; 4CNF B; 3L8U A; 1X7O A; 3AXZ A; 1V6Z A; 1ZJR A; 1UAK A; 2CX8 A; 2I6D A; 3GYQ A; 4H3Y A; 1NXZ A; 3NK6 A; 2Z0Y A; 1K3R A; 3QUV A; 2QWV A; 1UAJ A; 3ILK A; 4CNG B; 3KY7 A; 3N4J A; 3N4K A; 1MXI A; 1V2X A; 1P9P A; 4H3Z A; 1VHY A; 3E5Y A; #chains in the KnotProt database with same CATH homology 1O6D A; 1J85 A; 1VH0 A; 3NK7 A; 3KNU A; 3ONP A; 3AI9 X; 3IC6 A; 2QMM A; 3AIA A; 4FAK A; 4IG6 A; 1UAM A; 1VHK A; 3IEF A; 1NS5 A; 2O3A A; 2YY8 A; 1UAL A; 2HA8 A; 3KTY A; 1TO0 A; 1X7P A; 3DCM X; 4CNE B; 1GZ0 A; 4E8B A; 4CNF B; 3L8U A; 1X7O A; 3AXZ A; 1V6Z A; 1ZJR A; 1UAK A; 2CX8 A; 2I6D A; 3GYQ A; 4H3Y A; 1NXZ A; 3NK6 A; 2Z0Y A; 1K3R A; 3QUV A; 2QWV A; 1UAJ A; 3ILK A; 4CNG B; 3KY7 A; 3N4J A; 3N4K A; 1MXI A; 1V2X A; 1P9P A; 4H3Z A; 1VHY A; 3E5Y A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
