| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 187-232 | 46 | 1-186, 233-262 | 186 | 30 | knot |
Chain Sequence |
MNRVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIGADKLALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRYWGYEVLDTRRNLAESLKTVGADVVVATSRNASPITSILDEVKTRMRGAREAAILFGGPYKGLPEIDADIWVNTLPGQCTETVRTEEAVLATLSVFNMLTQ
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 187-234 | 48 | 1-186, 235-262 | 186 | 28 | knot | ||||
| view details |
 |
2.1 | 186-229 | 44 | 1-185 | 236-262 | 230-235 | 185 | 27 | slipknot | ||
| view details |
|
2.1 | 189-242 | 54 | 1-186, 255-262 | 187-188, 243-254 | 186 | 8 | slipknot | |||
| view details |
|
3.1 | 189-239 | 51 | 1-186, 243-262 | 187-188, 240-242 | 186 | 20 | slipknot |
| sequence length |
262
|
| structure length |
262
|
| publication title |
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
conserved protein MT0001
|
| source organism |
Methanothermobacter thermautotrophicus
|
| total genus |
 Genus: 73
|
| ec nomenclature | |
| pdb deposition date | 2001-10-03 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02598 | Methyltrn_RNA_3 | Putative RNA methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 1MXI A; 3AIA A; 3NK7 A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 2Z0Y A; 3NK6 A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH topology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 1MXI A; 3AIA A; 3NK7 A; 1TWG B; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 2Z0Y A; 3NK6 A; 3N4J A; 1TWH B; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH homology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 1MXI A; 3AIA A; 3NK7 A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 2Z0Y A; 3NK6 A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
