| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 86-130 | 45 | 1-85, 131-246 | 85 | 116 | knot |
Chain Sequence |
MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLG-----------EGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQARLLAEFKTEHAQ
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 85-133 | 49 | 1-84, 134-235 | 84 | 102 | knot | ||||
| view details |
|
3.1 | 84-131 | 48 | 1-83 | 152-235 | 132-151 | 83 | 84 | slipknot | ||
| view details |
|
3.1 | 86-140 | 55 | 1-84, 148-235 | 85-85, 141-147 | 84 | 88 | slipknot |
| sequence length |
246
|
| structure length |
235
|
| publication title |
Insights into Catalysis by a Knotted TrmD tRNA Methyltransferase.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (Guanine-N(1)-)-methyltransferase
|
| source organism |
Escherichia coli
|
| missing residues |
162-172
|
| total genus |
 Genus: 67
|
| ec nomenclature |
ec
2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase. |
| pdb deposition date | 2003-05-12 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Trp Operon Repressor; Chain A | tRNA(m1g37)methyltransferase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 3NK7 A; 3KTY A; 3AIA A; 1VHY A; 2I6D A; 3DCM X; 3N4J A; 4IG6 A; 3ILK A; 3ONP A; 1X7O A; 1UAJ A; 3N4K A; 3AXZ A; 3L8U A; 2QWV A; 4E8B A; 2CX8 A; 3E5Y A; 1NXZ A; 1ZJR A; 4H3Y A; 1TO0 A; 1VHK A; 1VH0 A; 1V6Z A; 4FAK A; 1GZ0 A; 2Z0Y A; 4CNG B; 3QUV A; 1K3R A; 3NK6 A; 1UAK A; 1UAL A; 3AI9 X; 3GYQ A; 4H3Z A; 3IC6 A; 2QMM A; 4CNF B; 1NS5 A; 1V2X A; 2HA8 A; 2YY8 A; 3IEF A; 3KY7 A; 1O6D A; 1X7P A; 2O3A A; 3KNU A; 1J85 A; 1P9P A; 4CNE B; 1UAM A; 1MXI A; #chains in the KnotProt database with same CATH topology 3NK7 A; 3KTY A; 3AIA A; 1VHY A; 2I6D A; 3DCM X; 3N4J A; 4IG6 A; 3ILK A; 3ONP A; 1X7O A; 1UAJ A; 3N4K A; 3AXZ A; 3L8U A; 2QWV A; 4E8B A; 2CX8 A; 3E5Y A; 1NXZ A; 1ZJR A; 4H3Y A; 1TO0 A; 1VHK A; 1VH0 A; 1V6Z A; 4FAK A; 1GZ0 A; 2Z0Y A; 4CNG B; 3QUV A; 1K3R A; 3NK6 A; 1UAK A; 1UAL A; 3AI9 X; 3GYQ A; 4H3Z A; 3IC6 A; 2QMM A; 4CNF B; 1NS5 A; 1V2X A; 2HA8 A; 2YY8 A; 3IEF A; 3KY7 A; 1O6D A; 1X7P A; 2O3A A; 3KNU A; 1J85 A; 1P9P A; 4CNE B; 1UAM A; 1MXI A; #chains in the KnotProt database with same CATH homology 3NK7 A; 3KTY A; 3AIA A; 1VHY A; 2I6D A; 3DCM X; 3N4J A; 4IG6 A; 3ILK A; 3ONP A; 1X7O A; 1UAJ A; 3N4K A; 3AXZ A; 3L8U A; 2QWV A; 4E8B A; 2CX8 A; 3E5Y A; 1NXZ A; 1ZJR A; 4H3Y A; 1TO0 A; 1VHK A; 1VH0 A; 1V6Z A; 4FAK A; 1GZ0 A; 2Z0Y A; 4CNG B; 3QUV A; 1K3R A; 3NK6 A; 1UAK A; 1UAL A; 3AI9 X; 3GYQ A; 4H3Z A; 3IC6 A; 2QMM A; 4CNF B; 1NS5 A; 1V2X A; 2HA8 A; 2YY8 A; 3IEF A; 3KY7 A; 1O6D A; 1X7P A; 2O3A A; 3KNU A; 1J85 A; 1P9P A; 4CNE B; 1UAM A; 1MXI A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
