| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 192-232 | 41 | 1-191, 233-265 | 191 | 33 | knot |
Chain Sequence |
RNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAILYEAVRQRISGR
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 191-233 | 43 | 1-190, 234-265 | 190 | 32 | knot | ||||
| view details |
 |
2.1 | 190-230 | 41 | 1-189 | 236-265 | 231-235 | 189 | 30 | slipknot | ||
| view details |
|
3.1 | 192-234 | 43 | 235-265 | 1-190 | 191-191 | 190 | 30 | slipknot | ||
| view details |
|
3.1 | 193-242 | 50 | 1-191, 252-265 | 192-192, 243-251 | 191 | 14 | slipknot | |||
| view details |
|
3.1 | 193-236 | 44 | 1-191, 242-265 | 192-192, 237-241 | 191 | 24 | slipknot | |||
| view details |
|
3.1 | 193-252 | 60 | 253-265 | 1-191 | 192-192 | 191 | 12 | slipknot | ||
| view details |
|
2.1 | 194-253 | 60 | 1-192, 263-265 | 193-193, 254-262 | 192 | 3 | slipknot |
| sequence length |
265
|
| structure length |
265
|
| publication title |
Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
rRNA methyltransferase
|
| source organism |
Streptomyces viridochromogenes
|
| total genus |
 Genus: 86
|
| ec nomenclature |
ec
2.1.1.208: 23S rRNA (uridine(2479)-2'-O)-methyltransferase. |
| pdb deposition date | 2004-08-16 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH topology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH homology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
