1X7O | KnotProt

Genus: 82

Knot K +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	192-232	41	1-191, 233-267			191	35	knot

Chain Sequence

RNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIPMAGSASSLNAANAATAILYEAVRQRISGRTA

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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java.vendor: Java2Script (HTML5)

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	3.1	192-233	42	1-191, 234-267			191	34	knot
view details	2.1	190-230	41	1-189	236-267	231-235	189	32	slipknot
view details	3.1	193-236	44		1-191, 256-267	192-192, 237-255	191	12	slipknot
view details	2.1	193-255	63		1-191, 258-267	192-192, 256-257	191	10	slipknot
view details	2.1	194-238	45		1-192, 255-267	193-193, 239-254	192	13	slipknot

sequence length	267
structure length	267
publication title	Structure and function of the antibiotic resistance-mediating methyltransferase AviRb from Streptomyces viridochromogenes pubmed doi rcsb
molecule tags	Transferase
molecule keywords	rRNA methyltransferase
source organism	Streptomyces viridochromogenes
total genus	Genus: 82
ec nomenclature	ec 2.1.1.208: 23S rRNA (uridine(2479)-2'-O)-methyltransferase.
pdb deposition date	2004-08-16
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00588	SpoU_methylase	SpoU rRNA Methylase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1330.30	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30; Chain: A;	60s Ribosomal Protein L30; Chain: A;	1x7oA01
3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	1x7oA02

1O6DA 1J85A 1VH0A 3NK7A 3KNUA 3ONPA 3AI9X 3IC6A 2QMMA 3AIAA 4FAKA 4IG6A 1UAMA 1VHKA 3IEFA 1NS5A 2O3AA 2YY8A 1UALA 2HA8A 3KTYA 1X7PA 1TO0A 3DCMX 4CNEB 1GZ0A 4E8BA 4CNFB 3L8UA 1X7OA 3AXZA 1V6ZA 3GYQA 2I6DA 1UAKA 1ZJRA 2CX8A 4H3YA 1NXZA 3NK6A 2Z0YA 1K3RA 3QUVA 2QWVA 1UAJA 3ILKA 4CNGB 3KY7A 3N4JA 3N4KA 1MXIA 1V2XA 1P9PA 4H3ZA 1VHYA 3E5YA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1O6D A;  1J85 A;  1VH0 A;  3NK7 A;  3KNU A;  3ONP A;  3AI9 X;  3IC6 A;  2QMM A;  3AIA A;  4FAK A;  4IG6 A;  1UAM A;  1VHK A;  3IEF A;  1NS5 A;  2O3A A;  2YY8 A;  1UAL A;  2HA8 A;  3KTY A;  1X7P A;  1TO0 A;  3DCM X;  4CNE B;  1GZ0 A;  4E8B A;  4CNF B;  3L8U A;  1X7O A;  3AXZ A;  1V6Z A;  3GYQ A;  2I6D A;  1UAK A;  1ZJR A;  2CX8 A;  4H3Y A;  1NXZ A;  3NK6 A;  2Z0Y A;  1K3R A;  3QUV A;  2QWV A;  1UAJ A;  3ILK A;  4CNG B;  3KY7 A;  3N4J A;  3N4K A;  1MXI A;  1V2X A;  1P9P A;  4H3Z A;  1VHY A;  3E5Y A; 
#chains in the KnotProt database with same CATH topology
 1O6D A;  1J85 A;  1VH0 A;  3NK7 A;  3KNU A;  3ONP A;  3AI9 X;  3IC6 A;  2QMM A;  3AIA A;  4FAK A;  4IG6 A;  1UAM A;  1VHK A;  3IEF A;  1NS5 A;  2O3A A;  2YY8 A;  1UAL A;  2HA8 A;  3KTY A;  1X7P A;  1TO0 A;  3DCM X;  4CNE B;  1GZ0 A;  4E8B A;  4CNF B;  3L8U A;  1X7O A;  3AXZ A;  1V6Z A;  3GYQ A;  2I6D A;  1UAK A;  1ZJR A;  2CX8 A;  4H3Y A;  1NXZ A;  3NK6 A;  2Z0Y A;  1K3R A;  3QUV A;  2QWV A;  1UAJ A;  3ILK A;  4CNG B;  3KY7 A;  3N4J A;  3N4K A;  1MXI A;  1V2X A;  1P9P A;  4H3Z A;  1VHY A;  3E5Y A; 
#chains in the KnotProt database with same CATH homology
 1O6D A;  1J85 A;  1VH0 A;  3NK7 A;  3KNU A;  3ONP A;  3AI9 X;  3IC6 A;  2QMM A;  3AIA A;  4FAK A;  4IG6 A;  1UAM A;  1VHK A;  3IEF A;  1NS5 A;  2O3A A;  2YY8 A;  1UAL A;  2HA8 A;  3KTY A;  1X7P A;  1TO0 A;  3DCM X;  4CNE B;  1GZ0 A;  4E8B A;  4CNF B;  3L8U A;  1X7O A;  3AXZ A;  1V6Z A;  3GYQ A;  2I6D A;  1UAK A;  1ZJR A;  2CX8 A;  4H3Y A;  1NXZ A;  3NK6 A;  2Z0Y A;  1K3R A;  3QUV A;  2QWV A;  1UAJ A;  3ILK A;  4CNG B;  3KY7 A;  3N4J A;  3N4K A;  1MXI A;  1V2X A;  1P9P A;  4H3Z A;  1VHY A;  3E5Y A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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1X7OA

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁