2CX8 | KnotProt

Genus: 70

Knot K +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	154-198	45	1-153, 199-225			153	27	knot

Chain Sequence

HRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Jmol getValue AUDIOCallback null

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Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

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Help Knotoid subchains data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				3.1	153-199	47	1-152, 200-225			152	26	knot
view details				2.1	150-196	47	1-149	203-225	197-202	149	23	slipknot

sequence length	225
structure length	225
publication title	Crystal structure of methyltransferase with ligand(SAH) rcsb
molecule tags	Transferase
molecule keywords	methyl transferase
source organism	Thermus thermophilus
total genus	Genus: 70
ec nomenclature
pdb deposition date	2005-06-28
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04452	Methyltrans_RNA	RNA methyltransferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.240.20	Mainly Beta	Beta Barrel	Ribosomal Protein L25; Chain P	Hypothetical PUA domain-like; domain 1	2cx8A01
3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	Alpha/beta knot	2cx8A02

1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1V6ZA 1GZ0A 1MXIA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 1V2XA 3N4KA 1VHYA 1P9PA 4H3ZA 3IEFA 1VHKA 1X7PA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 3KW2A 1UALA 1UAKA 4E8BA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1V6Z A;  1GZ0 A;  1MXI A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  1V2X A;  3N4K A;  1VHY A;  1P9P A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  3KW2 A;  1UAL A;  1UAK A;  4E8B A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH topology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1V6Z A;  1GZ0 A;  1MXI A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  1V2X A;  3N4K A;  1VHY A;  1P9P A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  3KW2 A;  1UAL A;  1UAK A;  4E8B A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH homology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1V6Z A;  1GZ0 A;  1MXI A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  1V2X A;  3N4K A;  1VHY A;  1P9P A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  3KW2 A;  1UAL A;  1UAK A;  4E8B A;  3ONP A;  3IC6 A;  1UAJ A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2CX8A

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁