2O3AA

Crystal structure of a protein af_0751 from archaeoglobus fulgidus
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 46
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 78-119 42 1-77, 120-167 77 48 knot
Chain Sequence
LEVYVLRLGHRP--DKRISTHVALTARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGPP----EVYELCDLNISIGTQPHSEVAALAVFLDRVLGKVFDISFDDAKIKVIPSERGKRVVS
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 75-114 40 1-74, 115-161 74 47 knot
sequence length 167
structure length 161
publication title Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
rcsb
molecule tags Structural genomics, unknown function
molecule keywords UPF0106 protein AF_0751
source organism Archaeoglobus fulgidus
missing residues 13-14, 105-108
total genus Genus: 46
ec nomenclature ec 2.1.1.206: tRNA (cytidine(56)-2'-O)-methyltransferase.
pdb deposition date 2006-12-01
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01994 Trm56 tRNA ribose 2'-O-methyltransferase, aTrm56
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2o3aA00
1UAKA 1V6ZA 3IC6A 1UALA 1NXZA 3ILKA 1O6DA 4H3ZA 1VHYA 1ZJRA 2HA8A 1VH0A 2CX8A 4CNGB 2QWVA 3AXZA 3AI9X 1X7PA 4IG6A 4E8BA 1K3RA 4FAKA 2Z0YA 1GZ0A 4CNFB 3IEFA 3GYQA 1P9PA 3KY7A 3NK6A 1VHKA 2QMMA 3N4JA 1V2XA 3E5YA 3AIAA 3DCMX 1NS5A 1J85A 1TO0A 3N4KA 2YY8A 1X7OA 2O3AA 2I6DA 4CNEB 4H3YA 3L8UA 3NK7A 1UAJA 3QUVA 3ONPA 3KTYA 1MXIA 3KNUA 1UAMA
chains in the KnotProt database with same CATH superfamily
1UAKA 1V6ZA 3IC6A 1UALA 1NXZA 3ILKA 1O6DA 4H3ZA 1VHYA 1ZJRA 2HA8A 1VH0A 2CX8A 4CNGB 2QWVA 3AXZA 3AI9X 1X7PA 4IG6A 4E8BA 1K3RA 4FAKA 2Z0YA 1GZ0A 4CNFB 3IEFA 3GYQA 1P9PA 3KY7A 3NK6A 1VHKA 2QMMA 3N4JA 1V2XA 3E5YA 3AIAA 3DCMX 1NS5A 1J85A 1TO0A 3N4KA 2YY8A 1X7OA 2O3AA 2I6DA 4CNEB 4H3YA 3L8UA 3NK7A 1UAJA 3QUVA 3ONPA 3KTYA 1MXIA 3KNUA 1UAMA
chains in the KnotProt database with same CATH topology
1UAKA 1V6ZA 3IC6A 1UALA 1NXZA 3ILKA 1O6DA 4H3ZA 1VHYA 1ZJRA 2HA8A 1VH0A 2CX8A 4CNGB 2QWVA 3AXZA 3AI9X 1X7PA 4IG6A 4E8BA 1K3RA 4FAKA 2Z0YA 1GZ0A 4CNFB 3IEFA 3GYQA 1P9PA 3KY7A 3NK6A 1VHKA 2QMMA 3N4JA 1V2XA 3E5YA 3AIAA 3DCMX 1NS5A 1J85A 1TO0A 3N4KA 2YY8A 1X7OA 2O3AA 2I6DA 4CNEB 4H3YA 3L8UA 3NK7A 1UAJA 3QUVA 3ONPA 3KTYA 1MXIA 3KNUA 1UAMA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1UAK A;  1V6Z A;  3IC6 A;  1UAL A;  1NXZ A;  3ILK A;  1O6D A;  4H3Z A;  1VHY A;  1ZJR A;  2HA8 A;  1VH0 A;  2CX8 A;  4CNG B;  2QWV A;  3AXZ A;  3AI9 X;  1X7P A;  4IG6 A;  4E8B A;  1K3R A;  4FAK A;  2Z0Y A;  1GZ0 A;  4CNF B;  3IEF A;  3GYQ A;  1P9P A;  3KY7 A;  3NK6 A;  1VHK A;  2QMM A;  3N4J A;  1V2X A;  3E5Y A;  3AIA A;  3DCM X;  1NS5 A;  1J85 A;  1TO0 A;  3N4K A;  2YY8 A;  1X7O A;  2O3A A;  2I6D A;  4CNE B;  4H3Y A;  3L8U A;  3NK7 A;  1UAJ A;  3QUV A;  3ONP A;  3KTY A;  1MXI A;  3KNU A;  1UAM A; 
#chains in the KnotProt database with same CATH topology
 1UAK A;  1V6Z A;  3IC6 A;  1UAL A;  1NXZ A;  3ILK A;  1O6D A;  4H3Z A;  1VHY A;  1ZJR A;  2HA8 A;  1VH0 A;  2CX8 A;  4CNG B;  2QWV A;  3AXZ A;  3AI9 X;  1X7P A;  4IG6 A;  4E8B A;  1K3R A;  4FAK A;  2Z0Y A;  1GZ0 A;  4CNF B;  3IEF A;  3GYQ A;  1P9P A;  3KY7 A;  3NK6 A;  1VHK A;  2QMM A;  3N4J A;  1V2X A;  3E5Y A;  3AIA A;  3DCM X;  1NS5 A;  1J85 A;  1TO0 A;  3N4K A;  2YY8 A;  1X7O A;  2O3A A;  2I6D A;  4CNE B;  4H3Y A;  3L8U A;  3NK7 A;  1UAJ A;  3QUV A;  3ONP A;  3KTY A;  1MXI A;  3KNU A;  1UAM A; 
#chains in the KnotProt database with same CATH homology
 1UAK A;  1V6Z A;  3IC6 A;  1UAL A;  1NXZ A;  3ILK A;  1O6D A;  4H3Z A;  1VHY A;  1ZJR A;  2HA8 A;  1VH0 A;  2CX8 A;  4CNG B;  2QWV A;  3AXZ A;  3AI9 X;  1X7P A;  4IG6 A;  4E8B A;  1K3R A;  4FAK A;  2Z0Y A;  1GZ0 A;  4CNF B;  3IEF A;  3GYQ A;  1P9P A;  3KY7 A;  3NK6 A;  1VHK A;  2QMM A;  3N4J A;  1V2X A;  3E5Y A;  3AIA A;  3DCM X;  1NS5 A;  1J85 A;  1TO0 A;  3N4K A;  2YY8 A;  1X7O A;  2O3A A;  2I6D A;  4CNE B;  4H3Y A;  3L8U A;  3NK7 A;  1UAJ A;  3QUV A;  3ONP A;  3KTY A;  1MXI A;  3KNU A;  1UAM A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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