| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 179-221 | 43 | 1-178, 222-255 | 178 | 34 | knot |
Chain Sequence |
AMLSANQIKFLRSLRERKYRLREQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRAVSTPHDAEVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVVEGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSV----ESLNVAIATAILCSEWRRRS
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 178-224 | 47 | 1-177, 225-251 | 177 | 27 | knot | ||||
| view details |
 |
2.1 | 178-218 | 41 | 1-177 | 225-251 | 219-224 | 177 | 27 | slipknot | ||
| view details |
|
3.1 | 179-224 | 46 | 225-251 | 1-177 | 178-178 | 177 | 26 | slipknot | ||
| view details |
|
|
3.1 | 181-234 | 54 | 1-178, 242-251 | 179-180, 235-241 | 178 | 10 | slipknot | ||
| view details |
|
|
3.1 | 180-242 | 63 | 243-251 | 1-178 | 179-179 | 178 | 8 | slipknot | |
| view details |
|
|
3.1 | 181-243 | 63 | 1-179, 251-251 | 180-180, 244-250 | 179 | 1 | slipknot |
| sequence length |
255
|
| structure length |
251
|
| publication title |
The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.
rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
RNA methyltransferase, TrmH family
|
| source organism |
Porphyromonas gingivalis
|
| missing residues |
232-235
|
| total genus |
 Genus: 73
|
| ec nomenclature |
ec
2.1.1.-: |
| pdb deposition date | 2006-08-28 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 3AIA A; 3KNU A; 1UAK A; 3QUV A; 1X7P A; 1NS5 A; 3N4J A; 3KY7 A; 3AI9 X; 1UAL A; 1NXZ A; 2O3A A; 3KTY A; 3NK6 A; 1VHK A; 1TO0 A; 1X7O A; 1V6Z A; 1VHY A; 3ILK A; 4H3Y A; 1O6D A; 1V2X A; 2QMM A; 3N4K A; 4H3Z A; 1VH0 A; 1K3R A; 1UAM A; 4CNF B; 1J85 A; 3IC6 A; 3AXZ A; 1MXI A; 2HA8 A; 3L8U A; 3GYQ A; 1ZJR A; 3E5Y A; 4CNG B; 4E8B A; 1UAJ A; 2I6D A; 3NK7 A; 2YY8 A; 4FAK A; 2Z0Y A; 4IG6 A; 3DCM X; 2QWV A; 3IEF A; 2CX8 A; 4CNE B; 1P9P A; 3ONP A; 1GZ0 A; #chains in the KnotProt database with same CATH topology 3AIA A; 3KNU A; 1UAK A; 3QUV A; 1X7P A; 1NS5 A; 3N4J A; 3KY7 A; 3AI9 X; 1UAL A; 1NXZ A; 2O3A A; 3KTY A; 3NK6 A; 1VHK A; 1TO0 A; 1X7O A; 1V6Z A; 1VHY A; 3ILK A; 4H3Y A; 1O6D A; 1V2X A; 2QMM A; 3N4K A; 4H3Z A; 1VH0 A; 1K3R A; 1UAM A; 4CNF B; 1J85 A; 3IC6 A; 3AXZ A; 1MXI A; 2HA8 A; 3L8U A; 3GYQ A; 1ZJR A; 3E5Y A; 4CNG B; 4E8B A; 1UAJ A; 2I6D A; 3NK7 A; 2YY8 A; 4FAK A; 2Z0Y A; 4IG6 A; 3DCM X; 2QWV A; 3IEF A; 2CX8 A; 4CNE B; 1P9P A; 3ONP A; 1GZ0 A; #chains in the KnotProt database with same CATH homology 3AIA A; 3KNU A; 1UAK A; 3QUV A; 1X7P A; 1NS5 A; 3N4J A; 3KY7 A; 3AI9 X; 1UAL A; 1NXZ A; 2O3A A; 3KTY A; 3NK6 A; 1VHK A; 1TO0 A; 1X7O A; 1V6Z A; 1VHY A; 3ILK A; 4H3Y A; 1O6D A; 1V2X A; 2QMM A; 3N4K A; 4H3Z A; 1VH0 A; 1K3R A; 1UAM A; 4CNF B; 1J85 A; 3IC6 A; 3AXZ A; 1MXI A; 2HA8 A; 3L8U A; 3GYQ A; 1ZJR A; 3E5Y A; 4CNG B; 4E8B A; 1UAJ A; 2I6D A; 3NK7 A; 2YY8 A; 4FAK A; 2Z0Y A; 4IG6 A; 3DCM X; 2QWV A; 3IEF A; 2CX8 A; 4CNE B; 1P9P A; 3ONP A; 1GZ0 A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
