| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 193-234 | 42 | 1-192, 235-273 | 192 | 39 | knot |
Chain Sequence |
TEPAIITNASDPAVQRIIDVTKHS----KTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFAKVF-----GIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFAVRRAAAQA
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 118-223 | 106 | 1-117 | 229-264 | 224-228 | 117 | 36 | slipknot | ||
| view details |
|
2.1 | 184-226 | 43 | 227-264 | 1-3 | 4-183 | 3 | 37 | slipknot | ||
| view details |
|
2.1 | 130-223 | 94 | 1-117, 227-264 | 118-129, 224-226 | 117 | 38 | slipknot | |||
| view details |
|
2.1 | 182-223 | 42 | 1-129, 227-264 | 130-181, 224-226 | 129 | 38 | slipknot | |||
| view details |
|
2.1 | 185-247 | 63 | 1-183, 262-264 | 184-184, 248-261 | 183 | 3 | slipknot |
| sequence length |
273
|
| structure length |
264
|
| publication title |
Crystal Structure of the Nosiheptide-Resistance Methyltransferase of Streptomyces actuosus
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
23S rRNA methyltransferase
|
| source organism |
Streptomyces actuosus
|
| missing residues |
25-28, 88-92
|
| total genus |
 Genus: 77
|
| ec nomenclature |
ec
2.1.1.-: |
| pdb deposition date | 2010-06-18 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00588 | SpoU_methylase | SpoU rRNA Methylase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | 60s Ribosomal Protein L30; Chain: A; | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alpha/beta knot | Alpha/beta knot |
#chains in the KnotProt database with same CATH superfamily 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH topology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A; #chains in the KnotProt database with same CATH homology 1VHY A; 1UAJ A; 4H3Z A; 2QMM A; 4CNE B; 1X7P A; 1O6D A; 3KNU A; 3N4K A; 4E8B A; 3AI9 X; 4FAK A; 1NS5 A; 3IC6 A; 1UAM A; 1TO0 A; 4IG6 A; 1J85 A; 2QWV A; 3GYQ A; 1UAK A; 1K3R A; 1GZ0 A; 1VH0 A; 1ZJR A; 3NK7 A; 1MXI A; 3AIA A; 3KY7 A; 3KTY A; 3AXZ A; 1UAL A; 2HA8 A; 3ONP A; 1NXZ A; 2I6D A; 4H3Y A; 3ILK A; 4CNF B; 4CNG B; 1P9P A; 1V6Z A; 1X7O A; 2CX8 A; 3DCM X; 3E5Y A; 1VHK A; 2O3A A; 3IEF A; 3QUV A; 3NK6 A; 2Z0Y A; 3N4J A; 3L8U A; 2YY8 A; 1V2X A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
