3NK6A

Structure of the nosiheptide-resistance methyltransferase
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 193-234 42 1-192, 235-273 192 39 knot
Chain Sequence
TEPAIITNASDPAVQRIIDVTKHS----KTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVNQLFAKVF-----GIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFAVRRAAAQA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 118-223 106 1-117 229-264 224-228 117 36 slipknot
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2.1 184-226 43 227-264 1-3 4-183 3 37 slipknot
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2.1 130-223 94 1-117, 227-264 118-129, 224-226 117 38 slipknot
view details
2.1 182-223 42 1-129, 227-264 130-181, 224-226 129 38 slipknot
view details
2.1 185-247 63 1-183, 262-264 184-184, 248-261 183 3 slipknot
sequence length 273
structure length 264
publication title Crystal Structure of the Nosiheptide-Resistance Methyltransferase of Streptomyces actuosus
pubmed doi rcsb
molecule tags Transferase
molecule keywords 23S rRNA methyltransferase
source organism Streptomyces actuosus
missing residues 25-28, 88-92
total genus Genus: 77
ec nomenclature ec 2.1.1.-:
pdb deposition date 2010-06-18
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; 60s Ribosomal Protein L30; Chain: A; 3nk6A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3nk6A02
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1X7PA 1VHKA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH superfamily
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1X7PA 1VHKA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH topology
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1X7PA 1VHKA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1X7P A;  1VHK A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH topology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1X7P A;  1VHK A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH homology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1X7P A;  1VHK A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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