3ILKA

The structure of a probable methylase family protein from haemophilus influenzae rd kw20
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 80-130 51 1-79, 131-240 79 110 knot
Chain Sequence
NAMLENIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYALSAGAENIVKNARVVDSFDEAVDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAFLVQNNKKNSLSL-EKNYPTTDQLAYFFDYTERIYQSLGFIQNQGVMRKLKRLYYRAKLEKNELNILNGMLSAVEKRIDLTK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 79-131 53 1-78, 132-239 78 108 knot
view details
2.1 81-165 85 1-78, 183-239 79-80, 166-182 78 57 slipknot
view details
2.1 81-182 102 1-78, 206-239 79-80, 183-205 78 34 slipknot
sequence length 240
structure length 239
publication title The structure of a probable methylase family protein from Haemophilus influenzae Rd KW20
rcsb
molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized tRNA/rRNA methyltransferase HI0380
source organism Haemophilus influenzae
missing residues 172
total genus Genus: 73
ec nomenclature ec 2.1.1.-:
pdb deposition date 2009-08-07
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ilkA01
3AIAA 3KNUA 1UAKA 3QUVA 1X7PA 1NS5A 3N4JA 3KY7A 3AI9X 1UALA 1NXZA 2O3AA 3KTYA 3NK6A 1VHKA 1TO0A 1V6ZA 1X7OA 1VHYA 3ILKA 4H3YA 1O6DA 1V2XA 2QMMA 3N4KA 4H3ZA 1VH0A 1K3RA 1UAMA 4CNFB 1J85A 3IC6A 3AXZA 1MXIA 2HA8A 3L8UA 1ZJRA 3GYQA 3E5YA 4CNGB 4E8BA 1UAJA 2I6DA 3NK7A 2YY8A 4FAKA 2Z0YA 4IG6A 3DCMX 2QWVA 3IEFA 2CX8A 4CNEB 1P9PA 3ONPA 1GZ0A
chains in the KnotProt database with same CATH superfamily
3AIAA 3KNUA 1UAKA 3QUVA 1X7PA 1NS5A 3N4JA 3KY7A 3AI9X 1UALA 1NXZA 2O3AA 3KTYA 3NK6A 1VHKA 1TO0A 1V6ZA 1X7OA 1VHYA 3ILKA 4H3YA 1O6DA 1V2XA 2QMMA 3N4KA 4H3ZA 1VH0A 1K3RA 1UAMA 4CNFB 1J85A 3IC6A 3AXZA 1MXIA 2HA8A 3L8UA 1ZJRA 3GYQA 3E5YA 4CNGB 4E8BA 1UAJA 2I6DA 3NK7A 2YY8A 4FAKA 2Z0YA 4IG6A 3DCMX 2QWVA 3IEFA 2CX8A 4CNEB 1P9PA 3ONPA 1GZ0A
chains in the KnotProt database with same CATH topology
3AIAA 3KNUA 1UAKA 3QUVA 1X7PA 1NS5A 3N4JA 3KY7A 3AI9X 1UALA 1NXZA 2O3AA 3KTYA 3NK6A 1VHKA 1TO0A 1V6ZA 1X7OA 1VHYA 3ILKA 4H3YA 1O6DA 1V2XA 2QMMA 3N4KA 4H3ZA 1VH0A 1K3RA 1UAMA 4CNFB 1J85A 3IC6A 3AXZA 1MXIA 2HA8A 3L8UA 1ZJRA 3GYQA 3E5YA 4CNGB 4E8BA 1UAJA 2I6DA 3NK7A 2YY8A 4FAKA 2Z0YA 4IG6A 3DCMX 2QWVA 3IEFA 2CX8A 4CNEB 1P9PA 3ONPA 1GZ0A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3AIA A;  3KNU A;  1UAK A;  3QUV A;  1X7P A;  1NS5 A;  3N4J A;  3KY7 A;  3AI9 X;  1UAL A;  1NXZ A;  2O3A A;  3KTY A;  3NK6 A;  1VHK A;  1TO0 A;  1V6Z A;  1X7O A;  1VHY A;  3ILK A;  4H3Y A;  1O6D A;  1V2X A;  2QMM A;  3N4K A;  4H3Z A;  1VH0 A;  1K3R A;  1UAM A;  4CNF B;  1J85 A;  3IC6 A;  3AXZ A;  1MXI A;  2HA8 A;  3L8U A;  1ZJR A;  3GYQ A;  3E5Y A;  4CNG B;  4E8B A;  1UAJ A;  2I6D A;  3NK7 A;  2YY8 A;  4FAK A;  2Z0Y A;  4IG6 A;  3DCM X;  2QWV A;  3IEF A;  2CX8 A;  4CNE B;  1P9P A;  3ONP A;  1GZ0 A; 
#chains in the KnotProt database with same CATH topology
 3AIA A;  3KNU A;  1UAK A;  3QUV A;  1X7P A;  1NS5 A;  3N4J A;  3KY7 A;  3AI9 X;  1UAL A;  1NXZ A;  2O3A A;  3KTY A;  3NK6 A;  1VHK A;  1TO0 A;  1V6Z A;  1X7O A;  1VHY A;  3ILK A;  4H3Y A;  1O6D A;  1V2X A;  2QMM A;  3N4K A;  4H3Z A;  1VH0 A;  1K3R A;  1UAM A;  4CNF B;  1J85 A;  3IC6 A;  3AXZ A;  1MXI A;  2HA8 A;  3L8U A;  1ZJR A;  3GYQ A;  3E5Y A;  4CNG B;  4E8B A;  1UAJ A;  2I6D A;  3NK7 A;  2YY8 A;  4FAK A;  2Z0Y A;  4IG6 A;  3DCM X;  2QWV A;  3IEF A;  2CX8 A;  4CNE B;  1P9P A;  3ONP A;  1GZ0 A; 
#chains in the KnotProt database with same CATH homology
 3AIA A;  3KNU A;  1UAK A;  3QUV A;  1X7P A;  1NS5 A;  3N4J A;  3KY7 A;  3AI9 X;  1UAL A;  1NXZ A;  2O3A A;  3KTY A;  3NK6 A;  1VHK A;  1TO0 A;  1V6Z A;  1X7O A;  1VHY A;  3ILK A;  4H3Y A;  1O6D A;  1V2X A;  2QMM A;  3N4K A;  4H3Z A;  1VH0 A;  1K3R A;  1UAM A;  4CNF B;  1J85 A;  3IC6 A;  3AXZ A;  1MXI A;  2HA8 A;  3L8U A;  1ZJR A;  3GYQ A;  3E5Y A;  4CNG B;  4E8B A;  1UAJ A;  2I6D A;  3NK7 A;  2YY8 A;  4FAK A;  2Z0Y A;  4IG6 A;  3DCM X;  2QWV A;  3IEF A;  2CX8 A;  4CNE B;  1P9P A;  3ONP A;  1GZ0 A; 
3IC6A 3KTYA 4CNDA 4CNEA 4XBOA 5GM8A 5GMBA 5GMCA
similar chains in the KnotProt database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the KnotProt database (40% sequence similarity)
3IC6 A; 3KTY A; 4CND A; 4CNE A; 4XBO A; 5GM8 A; 5GMB A; 5GMC A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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