4CNFB

Crystal structure of sulfolobus acidocaldarius trmj
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 75-127 53 1-74, 128-156 74 29 knot
Chain Sequence
MTIRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKADINEAIKFSAKGSEVIEKMMKITNNFDDAIRDVDLKIATSSIADI-----RKSIRPIDLERLIKDKKVAFIFGRESVGLTREEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 76-124 49 1-75, 125-151 75 27 knot
view details
2.1 74-120 47 1-73 127-151 121-126 73 25 slipknot
sequence length 156
structure length 151
publication title Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates.
pubmed doi rcsb
molecule tags Transferase
molecule keywords SPOU RRNA METHYLASE
source organism Sulfolobus acidocaldarius
missing residues 84-88
ec nomenclature ec 2.1.1.200: tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase.
pdb deposition date 2014-01-22
KnotProt deposition date 2018-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4cnfB00
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1VHKA 1X7PA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH superfamily
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1VHKA 1X7PA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH topology
1UAMA 3AIAA 3NK7A 3KNUA 1J85A 2HA8A 4IG6A 3DCMX 1TO0A 1O6DA 2I6DA 1NXZA 3L8UA 1X7OA 1VH0A 1GZ0A 1MXIA 1V6ZA 4FAKA 4H3YA 3E5YA 4CNGB 1K3RA 2O3AA 3ILKA 1ZJRA 2CX8A 3N4KA 1P9PA 1VHYA 4H3ZA 3IEFA 1VHKA 1X7PA 2QMMA 3N4JA 2QWVA 2YY8A 4CNFB 4CNEB 3QUVA 2Z0YA 1NS5A 3KTYA 3KY7A 3GYQA 3AXZA 3AI9X 3NK6A 4E8BA 1UALA 1UAKA 1V2XA 3ONPA 3IC6A 1UAJA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH topology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A; 
#chains in the KnotProt database with same CATH homology
 1UAM A;  3AIA A;  3NK7 A;  3KNU A;  1J85 A;  2HA8 A;  4IG6 A;  3DCM X;  1TO0 A;  1O6D A;  2I6D A;  1NXZ A;  3L8U A;  1X7O A;  1VH0 A;  1GZ0 A;  1MXI A;  1V6Z A;  4FAK A;  4H3Y A;  3E5Y A;  4CNG B;  1K3R A;  2O3A A;  3ILK A;  1ZJR A;  2CX8 A;  3N4K A;  1P9P A;  1VHY A;  4H3Z A;  3IEF A;  1VHK A;  1X7P A;  2QMM A;  3N4J A;  2QWV A;  2YY8 A;  4CNF B;  4CNE B;  3QUV A;  2Z0Y A;  1NS5 A;  3KTY A;  3KY7 A;  3GYQ A;  3AXZ A;  3AI9 X;  3NK6 A;  4E8B A;  1UAL A;  1UAK A;  1V2X A;  3ONP A;  3IC6 A;  1UAJ A;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling