1AJC | KnotProt

Genus: 160

Slipknot S +3₁

script 1 started

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Jmol Version: 14.29.13 2018-04-17 17:17

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	46-369	324	1-45	420-449	370-419	45	30	slipknot

Chain Sequence

TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGN---DSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Jmol JavaScript applet jmolApplet0__135678071849349__ initializing

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AppletRegistry.checkIn(jmolApplet0__135678071849349__)

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Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

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Jmol getValue bgcolor white

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Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

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Jmol applet jmolApplet0__135678071849349__ ready

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	3.1	48-370	323	1-47	411-446	371-410	47	36	slipknot
view details	2.1	36-366	331		1-7, 371-446	8-35, 367-370	7	76	slipknot
view details	2.1	45-410	366		1-9, 418-446	10-44, 411-417	9	29	slipknot
view details	2.1	41-366	326		1-35, 371-446	36-40, 367-370	35	76	slipknot

sequence length	449
structure length	446
publication title	Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase. pubmed doi rcsb
molecule tags	Non specific mono-esterase
molecule keywords	ALKALINE PHOSPHATASE
source organism	Escherichia coli
missing residues	405-407
total genus	Genus: 160
ec nomenclature	ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date	1995-07-18
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00245	Alk_phosphatase	Alkaline phosphatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	1ajcA00

1AUKA 3ED4A 1ELZA 3M8ZA 1KH4A 4FDJA 1EQJA 2G9YA 3M8WA 1B8JA 1AJAA 2ANHA 1ANJA 1ED9A 1EW2A 1ALIA 3TWZA 1KHNA 3UN5A 3UN3A 3T01A 1KHLA 1HQAA 3UNYA 1URAA 1P49A 3MK2A 1SHNA 1KHJA 3SZZA 1E3CP 1KHKA 1ALJA 1AJBA 3CMRA 1HDHA 1KH7A 1Y7AA 1ZEBA 3BDFA 1EW9A 1ELXA 3BDGB 1ED8A 2GLQA 1O99A 2GA3A 1ELYA 1HJKA 3OT9A 1E2SP 1E33P 3IGYB 3UN2A 3IGZB 4FDIA 3M8YA 2QZUA 3BDGA 1KH9A 3BDHA 1E1ZP 1K7HA 1ZEFA 3TX0A 1EW8A 1FSUA 1N2LA 1AJCA 3MK1A 1ALKA 1ZEDA 3T00A 3MK0A 3UO0A 1SHQA 3M7VA 3DYCA 1URBA 1EI6A 2IFYA 3DPCA 3NVLA 1O98A 3SZYA 3T02A 1ANIA 1Y6VA 1KH5A 1EJJA 1N2KA 1AJDA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1AUK A;  3ED4 A;  1ELZ A;  3M8Z A;  1KH4 A;  4FDJ A;  1EQJ A;  2G9Y A;  3M8W A;  1B8J A;  1AJA A;  2ANH A;  1ANJ A;  1ED9 A;  1EW2 A;  1ALI A;  3TWZ A;  1KHN A;  3UN5 A;  3UN3 A;  3T01 A;  1KHL A;  1HQA A;  3UNY A;  1URA A;  1P49 A;  3MK2 A;  1SHN A;  1KHJ A;  3SZZ A;  1E3C P;  1KHK A;  1ALJ A;  1AJB A;  3CMR A;  1HDH A;  1KH7 A;  1Y7A A;  1ZEB A;  3BDF A;  1EW9 A;  1ELX A;  3BDG B;  1ED8 A;  2GLQ A;  1O99 A;  2GA3 A;  1ELY A;  1HJK A;  3OT9 A;  1E2S P;  1E33 P;  3IGY B;  3UN2 A;  3IGZ B;  4FDI A;  3M8Y A;  2QZU A;  3BDG A;  1KH9 A;  3BDH A;  1E1Z P;  1K7H A;  1ZEF A;  3TX0 A;  1EW8 A;  1FSU A;  1N2L A;  1AJC A;  3MK1 A;  1ALK A;  1ZED A;  3T00 A;  3MK0 A;  3UO0 A;  1SHQ A;  3M7V A;  3DYC A;  1URB A;  1EI6 A;  2IFY A;  3DPC A;  3NVL A;  1O98 A;  3SZY A;  3T02 A;  1ANI A;  1Y6V A;  1KH5 A;  1EJJ A;  1N2K A;  1AJD A; 
#chains in the KnotProt database with same CATH topology
 1AUK A;  3ED4 A;  1ELZ A;  3M8Z A;  1KH4 A;  4FDJ A;  1EQJ A;  2G9Y A;  3M8W A;  1B8J A;  1AJA A;  2ANH A;  1ANJ A;  1ED9 A;  1EW2 A;  1ALI A;  3TWZ A;  1KHN A;  3UN5 A;  3UN3 A;  3T01 A;  1KHL A;  1HQA A;  3UNY A;  1URA A;  1P49 A;  3MK2 A;  1SHN A;  1KHJ A;  3SZZ A;  1E3C P;  1KHK A;  1ALJ A;  1AJB A;  3CMR A;  1HDH A;  1KH7 A;  1Y7A A;  1ZEB A;  3BDF A;  1EW9 A;  1ELX A;  3BDG B;  1ED8 A;  2GLQ A;  1O99 A;  2GA3 A;  1ELY A;  1HJK A;  3OT9 A;  1E2S P;  1E33 P;  3IGY B;  3UN2 A;  3IGZ B;  4FDI A;  3M8Y A;  2QZU A;  3BDG A;  1KH9 A;  3BDH A;  1E1Z P;  1K7H A;  1ZEF A;  3TX0 A;  1EW8 A;  1FSU A;  1N2L A;  1AJC A;  3MK1 A;  1ALK A;  1ZED A;  3T00 A;  3MK0 A;  3UO0 A;  1SHQ A;  3M7V A;  3DYC A;  1URB A;  1EI6 A;  2IFY A;  3DPC A;  3NVL A;  1O98 A;  3SZY A;  3T02 A;  1ANI A;  1Y6V A;  1KH5 A;  1EJJ A;  1N2K A;  1AJD A; 
#chains in the KnotProt database with same CATH homology
 1AUK A;  3ED4 A;  1ELZ A;  3M8Z A;  1KH4 A;  4FDJ A;  1EQJ A;  2G9Y A;  3M8W A;  1B8J A;  1AJA A;  2ANH A;  1ANJ A;  1ED9 A;  1EW2 A;  1ALI A;  3TWZ A;  1KHN A;  3UN5 A;  3UN3 A;  3T01 A;  1KHL A;  1HQA A;  3UNY A;  1URA A;  1P49 A;  3MK2 A;  1SHN A;  1KHJ A;  3SZZ A;  1E3C P;  1KHK A;  1ALJ A;  1AJB A;  3CMR A;  1HDH A;  1KH7 A;  1Y7A A;  1ZEB A;  3BDF A;  1EW9 A;  1ELX A;  3BDG B;  1ED8 A;  2GLQ A;  1O99 A;  2GA3 A;  1ELY A;  1HJK A;  3OT9 A;  1E2S P;  1E33 P;  3IGY B;  3UN2 A;  3IGZ B;  4FDI A;  3M8Y A;  2QZU A;  3BDG A;  1KH9 A;  3BDH A;  1E1Z P;  1K7H A;  1ZEF A;  3TX0 A;  1EW8 A;  1FSU A;  1N2L A;  1AJC A;  3MK1 A;  1ALK A;  1ZED A;  3T00 A;  3MK0 A;  3UO0 A;  1SHQ A;  3M7V A;  3DYC A;  1URB A;  1EI6 A;  2IFY A;  3DPC A;  3NVL A;  1O98 A;  3SZY A;  3T02 A;  1ANI A;  1Y6V A;  1KH5 A;  1EJJ A;  1N2K A;  1AJD A;

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similar chains in the pdb database (?% sequence similarity)

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1AJCA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁