3M8YA

Phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate activation
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-328 322 1-6 343-391 329-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 5-326 322 1-4 330-391 327-329 4 62 slipknot
view details
3.1 6-331 326 1-5 339-391 332-338 5 53 slipknot
view details
3.1 6-338 333 1-5 345-391 339-344 5 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 143
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-03-19
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3m8yA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3m8yA01
3OT9A 3SZZA 1AJCA 1ALKA 4FDIA 3UN3A 1HJKA 2QZUA 3IGZB 1ELYA 3BDHA 4FDJA 1ZEDA 2ANHA 3T00A 3M8ZA 3MK1A 1KH5A 3MK2A 1KHLA 1N2KA 3MK0A 3BDGB 1URBA 1HQAA 3M8WA 1KH4A 1ALIA 1ZEBA 1AJAA 3T01A 1AJBA 1AJDA 1AUKA 1EJJA 3BDGA 1ELZA 1E33P 1HDHA 3DYCA 3UNYA 1ALJA 1ED8A 1FSUA 3UO0A 3UN2A 1O99A 1E3CP 2GLQA 3M7VA 1KHJA 1KHKA 1Y6VA 3BDFA 1EI6A 1KH9A 1ZEFA 1EW2A 1Y7AA 2IFYA 1N2LA 2G9YA 3SZYA 1SHNA 3NVLA 1E2SP 1EW8A 1ELXA 3IGYB 1ANIA 1O98A 3TX0A 1EQJA 3TWZA 3ED4A 2GA3A 1P49A 3CMRA 1EW9A 3M8YA 1E1ZP 1KH7A 1SHQA 1KHNA 1URAA 1K7HA 1B8JA 3DPCA 3UN5A 3T02A 1ED9A 1ANJA
chains in the KnotProt database with same CATH superfamily
3OT9A 3SZZA 1AJCA 1ALKA 3D7SB 3UN3A 1HJKA 2QZUA 3IGZB 4FDIA 1ELYA 3BDHA 4FDJA 1ZEDA 2ANHA 3T00A 3M8ZA 3MK1A 1KH5A 3MK2A 1KHLA 1N2KA 3MK0A 3BDGB 1URBA 1HQAA 3M8WA 1KH4A 1ALIA 1ZEBA 1AJAA 3T01A 1AJBA 1AJDA 3D7SD 1AUKA 1EJJA 3BDGA 1ELZA 1E33P 1HDHA 3DYCA 3UNYA 1ALJA 1ED8A 1FSUA 3UO0A 3UN2A 1O99A 1E3CP 2GLQA 3M7VA 1KHJA 1KHKA 1Y6VA 3BDFA 1EI6A 1KH9A 1ZEFA 1EW2A 1Y7AA 2IFYA 1N2LA 2G9YA 3SZYA 1SHNA 3NVLA 1E2SP 1EW8A 1ELXA 3IGYB 1ANIA 1O98A 3TX0A 1EQJA 3TWZA 3ED4A 2GA3A 1P49A 3CMRA 1EW9A 3M8YA 1E1ZP 1KH7A 1SHQA 1KHNA 1URAA 1K7HA 1B8JA 3DPCA 3UN5A 3T02A 1ED9A 1ANJA
chains in the KnotProt database with same CATH topology
3OT9A 3SZZA 1AJCA 1ALKA 4FDIA 3UN3A 1HJKA 2QZUA 3IGZB 1ELYA 3BDHA 4FDJA 1ZEDA 2ANHA 3T00A 3M8ZA 3MK1A 1KH5A 3MK2A 1KHLA 1N2KA 3MK0A 3BDGB 1URBA 1HQAA 3M8WA 1KH4A 1ALIA 1ZEBA 1AJAA 3T01A 1AJBA 1AJDA 1AUKA 1EJJA 3BDGA 1ELZA 1E33P 1HDHA 3DYCA 3UNYA 1ALJA 1ED8A 1FSUA 3UO0A 3UN2A 1O99A 1E3CP 2GLQA 3M7VA 1KHJA 1KHKA 1Y6VA 3BDFA 1EI6A 1KH9A 1ZEFA 1EW2A 1Y7AA 2IFYA 1N2LA 2G9YA 3SZYA 1SHNA 3NVLA 1E2SP 1EW8A 1ELXA 3IGYB 1ANIA 1O98A 3TX0A 1EQJA 3TWZA 3ED4A 2GA3A 1P49A 3CMRA 1EW9A 3M8YA 1E1ZP 1KH7A 1SHQA 1KHNA 1URAA 1K7HA 1B8JA 3DPCA 3UN5A 3T02A 1ED9A 1ANJA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3OT9 A;  3SZZ A;  1AJC A;  1ALK A;  4FDI A;  3UN3 A;  1HJK A;  2QZU A;  3IGZ B;  1ELY A;  3BDH A;  4FDJ A;  1ZED A;  2ANH A;  3T00 A;  3M8Z A;  3MK1 A;  1KH5 A;  3MK2 A;  1KHL A;  1N2K A;  3MK0 A;  3BDG B;  1URB A;  1HQA A;  3M8W A;  1KH4 A;  1ALI A;  1ZEB A;  1AJA A;  3T01 A;  1AJB A;  1AJD A;  1AUK A;  1EJJ A;  3BDG A;  1ELZ A;  1E33 P;  1HDH A;  3DYC A;  3UNY A;  1ALJ A;  1ED8 A;  1FSU A;  3UO0 A;  3UN2 A;  1O99 A;  1E3C P;  2GLQ A;  3M7V A;  1KHJ A;  1KHK A;  1Y6V A;  3BDF A;  1EI6 A;  1KH9 A;  1ZEF A;  1EW2 A;  1Y7A A;  2IFY A;  1N2L A;  2G9Y A;  3SZY A;  1SHN A;  3NVL A;  1E2S P;  1EW8 A;  1ELX A;  3IGY B;  1ANI A;  1O98 A;  3TX0 A;  1EQJ A;  3TWZ A;  3ED4 A;  2GA3 A;  1P49 A;  3CMR A;  1EW9 A;  3M8Y A;  1E1Z P;  1KH7 A;  1SHQ A;  1KHN A;  1URA A;  1K7H A;  1B8J A;  3DPC A;  3UN5 A;  3T02 A;  1ED9 A;  1ANJ A; 
#chains in the KnotProt database with same CATH topology
 3OT9 A;  3SZZ A;  1AJC A;  1ALK A;  3D7S B;  3UN3 A;  1HJK A;  2QZU A;  3IGZ B;  4FDI A;  1ELY A;  3BDH A;  4FDJ A;  1ZED A;  2ANH A;  3T00 A;  3M8Z A;  3MK1 A;  1KH5 A;  3MK2 A;  1KHL A;  1N2K A;  3MK0 A;  3BDG B;  1URB A;  1HQA A;  3M8W A;  1KH4 A;  1ALI A;  1ZEB A;  1AJA A;  3T01 A;  1AJB A;  1AJD A;  3D7S D;  1AUK A;  1EJJ A;  3BDG A;  1ELZ A;  1E33 P;  1HDH A;  3DYC A;  3UNY A;  1ALJ A;  1ED8 A;  1FSU A;  3UO0 A;  3UN2 A;  1O99 A;  1E3C P;  2GLQ A;  3M7V A;  1KHJ A;  1KHK A;  1Y6V A;  3BDF A;  1EI6 A;  1KH9 A;  1ZEF A;  1EW2 A;  1Y7A A;  2IFY A;  1N2L A;  2G9Y A;  3SZY A;  1SHN A;  3NVL A;  1E2S P;  1EW8 A;  1ELX A;  3IGY B;  1ANI A;  1O98 A;  3TX0 A;  1EQJ A;  3TWZ A;  3ED4 A;  2GA3 A;  1P49 A;  3CMR A;  1EW9 A;  3M8Y A;  1E1Z P;  1KH7 A;  1SHQ A;  1KHN A;  1URA A;  1K7H A;  1B8J A;  3DPC A;  3UN5 A;  3T02 A;  1ED9 A;  1ANJ A; 
#chains in the KnotProt database with same CATH homology
 3OT9 A;  3SZZ A;  1AJC A;  1ALK A;  4FDI A;  3UN3 A;  1HJK A;  2QZU A;  3IGZ B;  1ELY A;  3BDH A;  4FDJ A;  1ZED A;  2ANH A;  3T00 A;  3M8Z A;  3MK1 A;  1KH5 A;  3MK2 A;  1KHL A;  1N2K A;  3MK0 A;  3BDG B;  1URB A;  1HQA A;  3M8W A;  1KH4 A;  1ALI A;  1ZEB A;  1AJA A;  3T01 A;  1AJB A;  1AJD A;  1AUK A;  1EJJ A;  3BDG A;  1ELZ A;  1E33 P;  1HDH A;  3DYC A;  3UNY A;  1ALJ A;  1ED8 A;  1FSU A;  3UO0 A;  3UN2 A;  1O99 A;  1E3C P;  2GLQ A;  3M7V A;  1KHJ A;  1KHK A;  1Y6V A;  3BDF A;  1EI6 A;  1KH9 A;  1ZEF A;  1EW2 A;  1Y7A A;  2IFY A;  1N2L A;  2G9Y A;  3SZY A;  1SHN A;  3NVL A;  1E2S P;  1EW8 A;  1ELX A;  3IGY B;  1ANI A;  1O98 A;  3TX0 A;  1EQJ A;  3TWZ A;  3ED4 A;  2GA3 A;  1P49 A;  3CMR A;  1EW9 A;  3M8Y A;  1E1Z P;  1KH7 A;  1SHQ A;  1KHN A;  1URA A;  1K7H A;  1B8J A;  3DPC A;  3UN5 A;  3T02 A;  1ED9 A;  1ANJ A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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