1EI6A

Crystal structure of phosphonoacetate hydrolase complexed with phosphonoformate
Warning
  • Chain breaks within knotoid 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 126
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 24-240 217 1-23 376-406 241-375 23 31 slipknot
Chain Sequence
TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHGICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENILARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITADHGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLTRSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLD--GRLRNFDIIDLALNHLA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 22-240 219 1-21 368-404 241-367 21 37 slipknot
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3.1 22-367 346 1-21 372-404 368-371 21 33 slipknot
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3.1 21-371 351 1-20 374-404 372-373 20 31 slipknot
sequence length 406
structure length 404
publication title Crystal structure of Phosphonoacetate Hydrolase complexed with phosphonoformate
rcsb
molecule tags Hydrolase
molecule keywords PHOSPHONOACETATE HYDROLASE
source organism Pseudomonas fluorescens
missing residues 388-389
total genus Genus: 126
ec nomenclature ec 3.11.1.2: Phosphonoacetate hydrolase.
pdb deposition date 2000-02-24
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.110 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Domain 2, Phosphonoacetate Hydrolase 1ei6A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ei6A01
3BDHA 3MK2A 1N2KA 3DYCA 1ED8A 1ALKA 1KHNA 3TWZA 1AJAA 1B8JA 1Y6VA 1N2LA 3T00A 3DPCA 3T02A 1EW8A 4FDIA 3OT9A 1EW9A 3ED4A 3T01A 1O98A 3CMRA 1EQJA 1EI6A 1EJJA 1ZEDA 1ELXA 1P49A 1KH9A 3M7VA 1ZEFA 1E2SP 1KHJA 1E33P 1KH7A 1KH4A 1HDHA 1HJKA 1E1ZP 3UN2A 1KHKA 2G9YA 3M8ZA 3TX0A 3UN5A 1ZEBA 2QZUA 3SZYA 3BDGA 1HQAA 3SZZA 1ALJA 3UO0A 3M8YA 3MK1A 1AUKA 1K7HA 1ED9A 1EW2A 1SHNA 1ANIA 1ANJA 4FDJA 1URAA 1FSUA 1Y7AA 3MK0A 1SHQA 3IGYB 3BDGB 1ELYA 2GA3A 3M8WA 1KHLA 1AJDA 3IGZB 2GLQA 3BDFA 1AJBA 3NVLA 1E3CP 1ALIA 3UNYA 1O99A 3UN3A 2IFYA 1URBA 2ANHA 1KH5A 1AJCA 1ELZA
chains in the KnotProt database with same CATH superfamily
3BDHA 3MK2A 1N2KA 3DYCA 1ED8A 1ALKA 1KHNA 3TWZA 1AJAA 1B8JA 1Y6VA 1N2LA 3T00A 3DPCA 3T02A 1EW8A 4FDIA 3OT9A 1EW9A 3ED4A 3T01A 1O98A 3CMRA 1EQJA 1EI6A 1EJJA 1ZEDA 1ELXA 1P49A 1KH9A 3M7VA 1ZEFA 1E2SP 1KHJA 1E33P 1KH7A 1KH4A 1HDHA 1HJKA 1E1ZP 3UN2A 1KHKA 2G9YA 3M8ZA 3TX0A 3UN5A 1ZEBA 2QZUA 3SZYA 3BDGA 1HQAA 3SZZA 1ALJA 3UO0A 3M8YA 3MK1A 1AUKA 1K7HA 1ED9A 1EW2A 1SHNA 1ANIA 1ANJA 4FDJA 1URAA 1FSUA 1Y7AA 3MK0A 1SHQA 3IGYB 3BDGB 1ELYA 2GA3A 3M8WA 1KHLA 1AJDA 3IGZB 2GLQA 3BDFA 1AJBA 3NVLA 1E3CP 1ALIA 3UNYA 1O99A 3UN3A 2IFYA 1URBA 2ANHA 1KH5A 1AJCA 1ELZA
chains in the KnotProt database with same CATH topology
3BDHA 3MK2A 1N2KA 3DYCA 1ED8A 1ALKA 1KHNA 3TWZA 1AJAA 1B8JA 1Y6VA 1N2LA 3T00A 3DPCA 3T02A 1EW8A 4FDIA 3OT9A 1EW9A 3ED4A 3T01A 1O98A 3CMRA 1EQJA 1EI6A 1EJJA 1ZEDA 1ELXA 1P49A 1KH9A 3M7VA 1ZEFA 1E2SP 1KHJA 1E33P 1KH7A 1KH4A 1HDHA 1HJKA 1E1ZP 3UN2A 1KHKA 2G9YA 3M8ZA 3TX0A 3UN5A 1ZEBA 2QZUA 3SZYA 3BDGA 1HQAA 3SZZA 1ALJA 3UO0A 3M8YA 3MK1A 1AUKA 1K7HA 1ED9A 1EW2A 1SHNA 1ANIA 1ANJA 4FDJA 1URAA 1FSUA 1Y7AA 3MK0A 1SHQA 3IGYB 3BDGB 1ELYA 2GA3A 3M8WA 1KHLA 1AJDA 3IGZB 2GLQA 3BDFA 1AJBA 3NVLA 1E3CP 1ALIA 3UNYA 1O99A 3UN3A 2IFYA 1URBA 2ANHA 1KH5A 1AJCA 1ELZA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 3BDH A;  3MK2 A;  1N2K A;  3DYC A;  1ED8 A;  1ALK A;  1KHN A;  3TWZ A;  1AJA A;  1B8J A;  1Y6V A;  1N2L A;  3T00 A;  3DPC A;  3T02 A;  1EW8 A;  4FDI A;  3OT9 A;  1EW9 A;  3ED4 A;  3T01 A;  1O98 A;  3CMR A;  1EQJ A;  1EI6 A;  1EJJ A;  1ZED A;  1ELX A;  1P49 A;  1KH9 A;  3M7V A;  1ZEF A;  1E2S P;  1KHJ A;  1E33 P;  1KH7 A;  1KH4 A;  1HDH A;  1HJK A;  1E1Z P;  3UN2 A;  1KHK A;  2G9Y A;  3M8Z A;  3TX0 A;  3UN5 A;  1ZEB A;  2QZU A;  3SZY A;  3BDG A;  1HQA A;  3SZZ A;  1ALJ A;  3UO0 A;  3M8Y A;  3MK1 A;  1AUK A;  1K7H A;  1ED9 A;  1EW2 A;  1SHN A;  1ANI A;  1ANJ A;  4FDJ A;  1URA A;  1FSU A;  1Y7A A;  3MK0 A;  1SHQ A;  3IGY B;  3BDG B;  1ELY A;  2GA3 A;  3M8W A;  1KHL A;  1AJD A;  3IGZ B;  2GLQ A;  3BDF A;  1AJB A;  3NVL A;  1E3C P;  1ALI A;  3UNY A;  1O99 A;  3UN3 A;  2IFY A;  1URB A;  2ANH A;  1KH5 A;  1AJC A;  1ELZ A; 
#chains in the KnotProt database with same CATH topology
 3BDH A;  3MK2 A;  1N2K A;  3DYC A;  1ED8 A;  1ALK A;  1KHN A;  3TWZ A;  1AJA A;  1B8J A;  1Y6V A;  1N2L A;  3T00 A;  3DPC A;  3T02 A;  1EW8 A;  4FDI A;  3OT9 A;  1EW9 A;  3ED4 A;  3T01 A;  1O98 A;  3CMR A;  1EQJ A;  1EI6 A;  1EJJ A;  1ZED A;  1ELX A;  1P49 A;  1KH9 A;  3M7V A;  1ZEF A;  1E2S P;  1KHJ A;  1E33 P;  1KH7 A;  1KH4 A;  1HDH A;  1HJK A;  1E1Z P;  3UN2 A;  1KHK A;  2G9Y A;  3M8Z A;  3TX0 A;  3UN5 A;  1ZEB A;  2QZU A;  3SZY A;  3BDG A;  1HQA A;  3SZZ A;  1ALJ A;  3UO0 A;  3M8Y A;  3MK1 A;  1AUK A;  1K7H A;  1ED9 A;  1EW2 A;  1SHN A;  1ANI A;  1ANJ A;  4FDJ A;  1URA A;  1FSU A;  1Y7A A;  3MK0 A;  1SHQ A;  3IGY B;  3BDG B;  1ELY A;  2GA3 A;  3M8W A;  1KHL A;  1AJD A;  3IGZ B;  2GLQ A;  3BDF A;  1AJB A;  3NVL A;  1E3C P;  1ALI A;  3UNY A;  1O99 A;  3UN3 A;  2IFY A;  1URB A;  2ANH A;  1KH5 A;  1AJC A;  1ELZ A; 
#chains in the KnotProt database with same CATH homology
 3BDH A;  3MK2 A;  1N2K A;  3DYC A;  1ED8 A;  1ALK A;  1KHN A;  3TWZ A;  1AJA A;  1B8J A;  1Y6V A;  1N2L A;  3T00 A;  3DPC A;  3T02 A;  1EW8 A;  4FDI A;  3OT9 A;  1EW9 A;  3ED4 A;  3T01 A;  1O98 A;  3CMR A;  1EQJ A;  1EI6 A;  1EJJ A;  1ZED A;  1ELX A;  1P49 A;  1KH9 A;  3M7V A;  1ZEF A;  1E2S P;  1KHJ A;  1E33 P;  1KH7 A;  1KH4 A;  1HDH A;  1HJK A;  1E1Z P;  3UN2 A;  1KHK A;  2G9Y A;  3M8Z A;  3TX0 A;  3UN5 A;  1ZEB A;  2QZU A;  3SZY A;  3BDG A;  1HQA A;  3SZZ A;  1ALJ A;  3UO0 A;  3M8Y A;  3MK1 A;  1AUK A;  1K7H A;  1ED9 A;  1EW2 A;  1SHN A;  1ANI A;  1ANJ A;  4FDJ A;  1URA A;  1FSU A;  1Y7A A;  3MK0 A;  1SHQ A;  3IGY B;  3BDG B;  1ELY A;  2GA3 A;  3M8W A;  1KHL A;  1AJD A;  3IGZ B;  2GLQ A;  3BDF A;  1AJB A;  3NVL A;  1E3C P;  1ALI A;  3UNY A;  1O99 A;  3UN3 A;  2IFY A;  1URB A;  2ANH A;  1KH5 A;  1AJC A;  1ELZ A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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