1Y7AA

Structure of d153h/k328w e. coli alkaline phosphatase in presence of cobalt at 1.77 a resolution
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 47-369 323 1-46 419-449 370-418 46 31 slipknot
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDWQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 27-368 342 1-26 375-449 369-374 26 75 slipknot
view details
3.1 47-370 324 1-46 416-449 371-415 46 34 slipknot
view details
3.1 45-415 371 1-44 421-449 416-420 44 29 slipknot
view details
2.1 46-415 370 1-44, 419-449 45-45, 416-418 44 31 slipknot
sequence length 449
structure length 449
publication title Metal Specificity Is Correlated with Two Crucial Active Site Residues in Escherichia coli Alkaline Phosphatase(,).
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase
source organism Escherichia coli
total genus Genus: 162
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-12-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1y7aA00
1AUKA 3T00A 1EI6A 1ZEDA 1EJJA 3SZYA 3DPCA 1URAA 2QZUA 3M8WA 1HJKA 3MK1A 3UN3A 2IFYA 2GLQA 3UNYA 1ELZA 1K7HA 1HQAA 1EW8A 1B8JA 3BDFA 3SZZA 1ALJA 1E2SP 1ELXA 1Y6VA 3UN2A 3CMRA 3UN5A 1E3CP 1KHJA 1ED9A 3BDGA 1AJAA 1N2KA 1ANJA 3T01A 1ALIA 1O98A 3DYCA 1ANIA 1ED8A 1O99A 1ALKA 3M7VA 1AJBA 2GA3A 1KHNA 1FSUA 1AJCA 3BDGB 3IGYB 3T02A 1ZEFA 1SHQA 3M8YA 1KH7A 1KHKA 1KH5A 1ELYA 1ZEBA 1P49A 2G9YA 1E1ZP 2ANHA 1Y7AA 3UO0A 1EW9A 3MK0A 3TX0A 4FDJA 4FDIA 1KHLA 3M8ZA 1KH4A 3OT9A 3IGZB 3MK2A 1N2LA 1HDHA 1SHNA 3TWZA 1E33P 1KH9A 1EW2A 3ED4A 1URBA 1AJDA 3NVLA 1EQJA 3BDHA
chains in the KnotProt database with same CATH superfamily
1AUKA 3T00A 1EI6A 1ZEDA 1EJJA 3SZYA 3DPCA 1URAA 2QZUA 3M8WA 1HJKA 3MK1A 3UN3A 2IFYA 2GLQA 3UNYA 1ELZA 1K7HA 1HQAA 1EW8A 1B8JA 3BDFA 3SZZA 1ALJA 1E2SP 1ELXA 1Y6VA 3UN2A 3CMRA 3UN5A 1E3CP 1KHJA 1ED9A 3BDGA 1AJAA 1N2KA 1ANJA 3T01A 1ALIA 1O98A 3DYCA 1ANIA 1ED8A 1O99A 1ALKA 3M7VA 1AJBA 2GA3A 1KHNA 1FSUA 1AJCA 3BDGB 3IGYB 3T02A 1ZEFA 1SHQA 3M8YA 1KH7A 1KHKA 1KH5A 1ELYA 1ZEBA 1P49A 2G9YA 1E1ZP 2ANHA 1Y7AA 3UO0A 1EW9A 3MK0A 3TX0A 4FDJA 4FDIA 1KHLA 3M8ZA 1KH4A 3OT9A 3IGZB 3MK2A 1N2LA 1HDHA 1SHNA 3TWZA 1E33P 1KH9A 1EW2A 3ED4A 1URBA 1AJDA 3NVLA 1EQJA 3BDHA
chains in the KnotProt database with same CATH topology
1AUKA 3T00A 1EI6A 1ZEDA 1EJJA 3SZYA 3DPCA 1URAA 2QZUA 3M8WA 1HJKA 3MK1A 3UN3A 2IFYA 2GLQA 3UNYA 1ELZA 1K7HA 1HQAA 1EW8A 1B8JA 3BDFA 3SZZA 1ALJA 1E2SP 1ELXA 1Y6VA 3UN2A 3CMRA 3UN5A 1E3CP 1KHJA 1ED9A 3BDGA 1AJAA 1N2KA 1ANJA 3T01A 1ALIA 1O98A 3DYCA 1ANIA 1ED8A 1O99A 1ALKA 3M7VA 1AJBA 2GA3A 1KHNA 1FSUA 1AJCA 3BDGB 3IGYB 3T02A 1ZEFA 1SHQA 3M8YA 1KH7A 1KHKA 1KH5A 1ELYA 1ZEBA 1P49A 2G9YA 1E1ZP 2ANHA 1Y7AA 3UO0A 1EW9A 3MK0A 3TX0A 4FDJA 4FDIA 1KHLA 3M8ZA 1KH4A 3OT9A 3IGZB 3MK2A 1N2LA 1HDHA 1SHNA 3TWZA 1E33P 1KH9A 1EW2A 3ED4A 1URBA 1AJDA 3NVLA 1EQJA 3BDHA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1AUK A;  3T00 A;  1EI6 A;  1ZED A;  1EJJ A;  3SZY A;  3DPC A;  1URA A;  2QZU A;  3M8W A;  1HJK A;  3MK1 A;  3UN3 A;  2IFY A;  2GLQ A;  3UNY A;  1ELZ A;  1K7H A;  1HQA A;  1EW8 A;  1B8J A;  3BDF A;  3SZZ A;  1ALJ A;  1E2S P;  1ELX A;  1Y6V A;  3UN2 A;  3CMR A;  3UN5 A;  1E3C P;  1KHJ A;  1ED9 A;  3BDG A;  1AJA A;  1N2K A;  1ANJ A;  3T01 A;  1ALI A;  1O98 A;  3DYC A;  1ANI A;  1ED8 A;  1O99 A;  1ALK A;  3M7V A;  1AJB A;  2GA3 A;  1KHN A;  1FSU A;  1AJC A;  3BDG B;  3IGY B;  3T02 A;  1ZEF A;  1SHQ A;  3M8Y A;  1KH7 A;  1KHK A;  1KH5 A;  1ELY A;  1ZEB A;  1P49 A;  2G9Y A;  1E1Z P;  2ANH A;  1Y7A A;  3UO0 A;  1EW9 A;  3MK0 A;  3TX0 A;  4FDJ A;  4FDI A;  1KHL A;  3M8Z A;  1KH4 A;  3OT9 A;  3IGZ B;  3MK2 A;  1N2L A;  1HDH A;  1SHN A;  3TWZ A;  1E33 P;  1KH9 A;  1EW2 A;  3ED4 A;  1URB A;  1AJD A;  3NVL A;  1EQJ A;  3BDH A; 
#chains in the KnotProt database with same CATH topology
 1AUK A;  3T00 A;  1EI6 A;  1ZED A;  1EJJ A;  3SZY A;  3DPC A;  1URA A;  2QZU A;  3M8W A;  1HJK A;  3MK1 A;  3UN3 A;  2IFY A;  2GLQ A;  3UNY A;  1ELZ A;  1K7H A;  1HQA A;  1EW8 A;  1B8J A;  3BDF A;  3SZZ A;  1ALJ A;  1E2S P;  1ELX A;  1Y6V A;  3UN2 A;  3CMR A;  3UN5 A;  1E3C P;  1KHJ A;  1ED9 A;  3BDG A;  1AJA A;  1N2K A;  1ANJ A;  3T01 A;  1ALI A;  1O98 A;  3DYC A;  1ANI A;  1ED8 A;  1O99 A;  1ALK A;  3M7V A;  1AJB A;  2GA3 A;  1KHN A;  1FSU A;  1AJC A;  3BDG B;  3IGY B;  3T02 A;  1ZEF A;  1SHQ A;  3M8Y A;  1KH7 A;  1KHK A;  1KH5 A;  1ELY A;  1ZEB A;  1P49 A;  2G9Y A;  1E1Z P;  2ANH A;  1Y7A A;  3UO0 A;  1EW9 A;  3MK0 A;  3TX0 A;  4FDJ A;  4FDI A;  1KHL A;  3M8Z A;  1KH4 A;  3OT9 A;  3IGZ B;  3MK2 A;  1N2L A;  1HDH A;  1SHN A;  3TWZ A;  1E33 P;  1KH9 A;  1EW2 A;  3ED4 A;  1URB A;  1AJD A;  3NVL A;  1EQJ A;  3BDH A; 
#chains in the KnotProt database with same CATH homology
 1AUK A;  3T00 A;  1EI6 A;  1ZED A;  1EJJ A;  3SZY A;  3DPC A;  1URA A;  2QZU A;  3M8W A;  1HJK A;  3MK1 A;  3UN3 A;  2IFY A;  2GLQ A;  3UNY A;  1ELZ A;  1K7H A;  1HQA A;  1EW8 A;  1B8J A;  3BDF A;  3SZZ A;  1ALJ A;  1E2S P;  1ELX A;  1Y6V A;  3UN2 A;  3CMR A;  3UN5 A;  1E3C P;  1KHJ A;  1ED9 A;  3BDG A;  1AJA A;  1N2K A;  1ANJ A;  3T01 A;  1ALI A;  1O98 A;  3DYC A;  1ANI A;  1ED8 A;  1O99 A;  1ALK A;  3M7V A;  1AJB A;  2GA3 A;  1KHN A;  1FSU A;  1AJC A;  3BDG B;  3IGY B;  3T02 A;  1ZEF A;  1SHQ A;  3M8Y A;  1KH7 A;  1KHK A;  1KH5 A;  1ELY A;  1ZEB A;  1P49 A;  2G9Y A;  1E1Z P;  2ANH A;  1Y7A A;  3UO0 A;  1EW9 A;  3MK0 A;  3TX0 A;  4FDJ A;  4FDI A;  1KHL A;  3M8Z A;  1KH4 A;  3OT9 A;  3IGZ B;  3MK2 A;  1N2L A;  1HDH A;  1SHN A;  3TWZ A;  1E33 P;  1KH9 A;  1EW2 A;  3ED4 A;  1URB A;  1AJD A;  3NVL A;  1EQJ A;  3BDH A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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