1Y7AA

Structure of d153h/k328w e. coli alkaline phosphatase in presence of cobalt at 1.77 a resolution
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 47-369 323 1-46 419-449 370-418 46 31 slipknot
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDWQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 27-368 342 1-26 375-449 369-374 26 75 slipknot
view details
3.1 47-370 324 1-46 416-449 371-415 46 34 slipknot
view details
3.1 45-415 371 1-44 421-449 416-420 44 29 slipknot
view details
2.1 46-415 370 1-44, 419-449 45-45, 416-418 44 31 slipknot
sequence length 449
structure length 449
publication title Metal Specificity Is Correlated with Two Crucial Active Site Residues in Escherichia coli Alkaline Phosphatase(,).
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase
source organism Escherichia coli
total genus Genus: 162
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-12-08
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1y7aA00
1B8JA 3UN5A 1ELYA 3TWZA 1E1ZP 3T01A 1ZEBA 3UNYA 1KHKA 4FDJA 1ANIA 3BDGB 1HJKA 2QZUA 1ALIA 1AJDA 3M8YA 3M7VA 3UO0A 3SZZA 1EW2A 3DYCA 1ANJA 1K7HA 1ELZA 1AUKA 2IFYA 3M8WA 1EW9A 3TX0A 1O99A 1E2SP 1EI6A 1ALJA 2ANHA 2GA3A 1KHNA 1KH7A 3DPCA 1FSUA 1ZEFA 3SZYA 1Y7AA 1ELXA 1O98A 1ED8A 1E3CP 2GLQA 1N2LA 1KH9A 1SHQA 1KHLA 3IGYB 1ZEDA 1AJAA 3T00A 1KH4A 1AJBA 1KH5A 3MK0A 4FDIA 3IGZB 1EW8A 1SHNA 1EJJA 1URAA 1URBA 1AJCA 3T02A 3UN3A 3OT9A 2G9YA 3BDFA 1Y6VA 3BDHA 3NVLA 1KHJA 3M8ZA 3CMRA 3MK2A 3ED4A 3UN2A 1EQJA 1N2KA 1P49A 1ALKA 1HQAA 3BDGA 1E33P 1HDHA 1ED9A 3MK1A
chains in the KnotProt database with same CATH superfamily
1B8JA 3UN5A 1ELYA 3TWZA 1E1ZP 3T01A 1ZEBA 3UNYA 1KHKA 4FDJA 1ANIA 3BDGB 1HJKA 2QZUA 1ALIA 1AJDA 3M8YA 3M7VA 3UO0A 3SZZA 1EW2A 3DYCA 1ANJA 1K7HA 1ELZA 1AUKA 2IFYA 3M8WA 1EW9A 3TX0A 1O99A 1E2SP 1EI6A 1ALJA 2ANHA 2GA3A 1KHNA 1KH7A 3DPCA 1FSUA 1ZEFA 3SZYA 1Y7AA 1ELXA 1O98A 1ED8A 1E3CP 2GLQA 1N2LA 1KH9A 1SHQA 1KHLA 3IGYB 1ZEDA 1AJAA 3T00A 1KH4A 1AJBA 1KH5A 3MK0A 4FDIA 3IGZB 1EW8A 1SHNA 1EJJA 1URAA 1URBA 1AJCA 3T02A 3UN3A 3OT9A 2G9YA 3BDFA 1Y6VA 3BDHA 3NVLA 1KHJA 3M8ZA 3CMRA 3MK2A 3ED4A 3UN2A 1EQJA 1N2KA 1P49A 1ALKA 1HQAA 3BDGA 1E33P 1HDHA 1ED9A 3MK1A
chains in the KnotProt database with same CATH topology
1B8JA 3UN5A 1ELYA 3TWZA 1E1ZP 3T01A 1ZEBA 3UNYA 1KHKA 4FDJA 1ANIA 3BDGB 1HJKA 2QZUA 1ALIA 1AJDA 3M8YA 3M7VA 3UO0A 3SZZA 1EW2A 3DYCA 1ANJA 1K7HA 1ELZA 1AUKA 2IFYA 3M8WA 1EW9A 3TX0A 1O99A 1E2SP 1EI6A 1ALJA 2ANHA 2GA3A 1KHNA 1KH7A 3DPCA 1FSUA 1ZEFA 3SZYA 1Y7AA 1ELXA 1O98A 1ED8A 1E3CP 2GLQA 1N2LA 1KH9A 1SHQA 1KHLA 3IGYB 1ZEDA 1AJAA 3T00A 1KH4A 1AJBA 1KH5A 3MK0A 4FDIA 3IGZB 1EW8A 1SHNA 1EJJA 1URAA 1URBA 1AJCA 3T02A 3UN3A 3OT9A 2G9YA 3BDFA 1Y6VA 3BDHA 3NVLA 1KHJA 3M8ZA 3CMRA 3MK2A 3ED4A 3UN2A 1EQJA 1N2KA 1P49A 1ALKA 1HQAA 3BDGA 1E33P 1HDHA 1ED9A 3MK1A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1B8J A;  3UN5 A;  1ELY A;  3TWZ A;  1E1Z P;  3T01 A;  1ZEB A;  3UNY A;  1KHK A;  4FDJ A;  1ANI A;  3BDG B;  1HJK A;  2QZU A;  1ALI A;  1AJD A;  3M8Y A;  3M7V A;  3UO0 A;  3SZZ A;  1EW2 A;  3DYC A;  1ANJ A;  1K7H A;  1ELZ A;  1AUK A;  2IFY A;  3M8W A;  1EW9 A;  3TX0 A;  1O99 A;  1E2S P;  1EI6 A;  1ALJ A;  2ANH A;  2GA3 A;  1KHN A;  1KH7 A;  3DPC A;  1FSU A;  1ZEF A;  3SZY A;  1Y7A A;  1ELX A;  1O98 A;  1ED8 A;  1E3C P;  2GLQ A;  1N2L A;  1KH9 A;  1SHQ A;  1KHL A;  3IGY B;  1ZED A;  1AJA A;  3T00 A;  1KH4 A;  1AJB A;  1KH5 A;  3MK0 A;  4FDI A;  3IGZ B;  1EW8 A;  1SHN A;  1EJJ A;  1URA A;  1URB A;  1AJC A;  3T02 A;  3UN3 A;  3OT9 A;  2G9Y A;  3BDF A;  1Y6V A;  3BDH A;  3NVL A;  1KHJ A;  3M8Z A;  3CMR A;  3MK2 A;  3ED4 A;  3UN2 A;  1EQJ A;  1N2K A;  1P49 A;  1ALK A;  1HQA A;  3BDG A;  1E33 P;  1HDH A;  1ED9 A;  3MK1 A; 
#chains in the KnotProt database with same CATH topology
 1B8J A;  3UN5 A;  1ELY A;  3TWZ A;  1E1Z P;  3T01 A;  1ZEB A;  3UNY A;  1KHK A;  4FDJ A;  1ANI A;  3BDG B;  1HJK A;  2QZU A;  1ALI A;  1AJD A;  3M8Y A;  3M7V A;  3UO0 A;  3SZZ A;  1EW2 A;  3DYC A;  1ANJ A;  1K7H A;  1ELZ A;  1AUK A;  2IFY A;  3M8W A;  1EW9 A;  3TX0 A;  1O99 A;  1E2S P;  1EI6 A;  1ALJ A;  2ANH A;  2GA3 A;  1KHN A;  1KH7 A;  3DPC A;  1FSU A;  1ZEF A;  3SZY A;  1Y7A A;  1ELX A;  1O98 A;  1ED8 A;  1E3C P;  2GLQ A;  1N2L A;  1KH9 A;  1SHQ A;  1KHL A;  3IGY B;  1ZED A;  1AJA A;  3T00 A;  1KH4 A;  1AJB A;  1KH5 A;  3MK0 A;  4FDI A;  3IGZ B;  1EW8 A;  1SHN A;  1EJJ A;  1URA A;  1URB A;  1AJC A;  3T02 A;  3UN3 A;  3OT9 A;  2G9Y A;  3BDF A;  1Y6V A;  3BDH A;  3NVL A;  1KHJ A;  3M8Z A;  3CMR A;  3MK2 A;  3ED4 A;  3UN2 A;  1EQJ A;  1N2K A;  1P49 A;  1ALK A;  1HQA A;  3BDG A;  1E33 P;  1HDH A;  1ED9 A;  3MK1 A; 
#chains in the KnotProt database with same CATH homology
 1B8J A;  3UN5 A;  1ELY A;  3TWZ A;  1E1Z P;  3T01 A;  1ZEB A;  3UNY A;  1KHK A;  4FDJ A;  1ANI A;  3BDG B;  1HJK A;  2QZU A;  1ALI A;  1AJD A;  3M8Y A;  3M7V A;  3UO0 A;  3SZZ A;  1EW2 A;  3DYC A;  1ANJ A;  1K7H A;  1ELZ A;  1AUK A;  2IFY A;  3M8W A;  1EW9 A;  3TX0 A;  1O99 A;  1E2S P;  1EI6 A;  1ALJ A;  2ANH A;  2GA3 A;  1KHN A;  1KH7 A;  3DPC A;  1FSU A;  1ZEF A;  3SZY A;  1Y7A A;  1ELX A;  1O98 A;  1ED8 A;  1E3C P;  2GLQ A;  1N2L A;  1KH9 A;  1SHQ A;  1KHL A;  3IGY B;  1ZED A;  1AJA A;  3T00 A;  1KH4 A;  1AJB A;  1KH5 A;  3MK0 A;  4FDI A;  3IGZ B;  1EW8 A;  1SHN A;  1EJJ A;  1URA A;  1URB A;  1AJC A;  3T02 A;  3UN3 A;  3OT9 A;  2G9Y A;  3BDF A;  1Y6V A;  3BDH A;  3NVL A;  1KHJ A;  3M8Z A;  3CMR A;  3MK2 A;  3ED4 A;  3UN2 A;  1EQJ A;  1N2K A;  1P49 A;  1ALK A;  1HQA A;  3BDG A;  1E33 P;  1HDH A;  1ED9 A;  3MK1 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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