3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Genus: 205
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-463 449 1-14 498-549 464-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 16-467 452 1-15 494-549 468-493 15 56 slipknot
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3.1 16-493 478 1-15 497-549 494-496 15 53 slipknot
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2.1 12-496 485 1-11 501-549 497-500 11 49 slipknot
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2.1 13-496 484 1-11, 500-549 12-12, 497-499 11 50 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 205
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igyB02
1O98A 3UNYA 1ELYA 1EW8A 1ELZA 3ED4A 1B8JA 4FDJA 1KH9A 3MK1A 1EI6A 1SHNA 3DPCA 3M7VA 1ANJA 1KH7A 3T02A 3TX0A 2G9YA 3BDHA 1Y6VA 1AJDA 1FSUA 1EQJA 1ELXA 1HDHA 1ED8A 1AUKA 3IGYB 1E33P 3NVLA 1E1ZP 1ZEFA 1K7HA 1EJJA 3M8YA 1EW2A 2QZUA 1AJCA 1O99A 1ZEBA 1ALIA 1E2SP 3DYCA 3M8ZA 3MK2A 1HQAA 3BDFA 4FDIA 1Y7AA 3SZZA 3UN3A 1KHJA 3SZYA 1P49A 3TWZA 3UO0A 3UN2A 2ANHA 3T01A 1URBA 1EW9A 1KHLA 1ANIA 1N2KA 3M8WA 1E3CP 1ED9A 3CMRA 2GA3A 1AJBA 1URAA 1KH5A 1SHQA 1KHNA 3BDGA 3BDGB 3UN5A 1N2LA 2GLQA 1ALJA 1AJAA 1HJKA 1ZEDA 3IGZB 1ALKA 3T00A 3OT9A 1KHKA 2IFYA 3MK0A 1KH4A
chains in the KnotProt database with same CATH superfamily
1O98A 3UNYA 1ELYA 1EW8A 1ELZA 3ED4A 1B8JA 4FDJA 1KH9A 3MK1A 1EI6A 1SHNA 3DPCA 3M7VA 1ANJA 1KH7A 3T02A 3TX0A 2G9YA 3BDHA 1Y6VA 1AJDA 1FSUA 1EQJA 1ELXA 1HDHA 1ED8A 1AUKA 3IGYB 1E33P 3NVLA 1E1ZP 1ZEFA 1K7HA 1EJJA 3M8YA 1EW2A 2QZUA 1AJCA 1O99A 1ZEBA 1ALIA 1E2SP 3DYCA 3M8ZA 3MK2A 1HQAA 3BDFA 4FDIA 1Y7AA 3SZZA 3UN3A 1KHJA 3SZYA 1P49A 3TWZA 3UO0A 3UN2A 2ANHA 3T01A 1URBA 1EW9A 1KHLA 1ANIA 1N2KA 3M8WA 1E3CP 1ED9A 3CMRA 2GA3A 1AJBA 1URAA 1KH5A 1SHQA 1KHNA 3BDGA 3BDGB 3UN5A 1N2LA 2GLQA 1ALJA 1AJAA 1HJKA 1ZEDA 3IGZB 1ALKA 3T00A 3OT9A 1KHKA 2IFYA 3MK0A 1KH4A
chains in the KnotProt database with same CATH topology
1O98A 3UNYA 1ELYA 1EW8A 1ELZA 3ED4A 1B8JA 4FDJA 1KH9A 3MK1A 1EI6A 1SHNA 3DPCA 3M7VA 1ANJA 1KH7A 3T02A 3TX0A 2G9YA 3BDHA 1Y6VA 1AJDA 1FSUA 1EQJA 1ELXA 1HDHA 1ED8A 1AUKA 3IGYB 1E33P 3NVLA 1E1ZP 1ZEFA 1K7HA 1EJJA 3M8YA 1EW2A 2QZUA 1AJCA 1O99A 1ZEBA 1ALIA 1E2SP 3DYCA 3M8ZA 3MK2A 1HQAA 3BDFA 4FDIA 1Y7AA 3SZZA 3UN3A 1KHJA 3SZYA 1P49A 3TWZA 3UO0A 3UN2A 2ANHA 3T01A 1URBA 1EW9A 1KHLA 1ANIA 1N2KA 3M8WA 1E3CP 1ED9A 3CMRA 2GA3A 1AJBA 1URAA 1KH5A 1SHQA 1KHNA 3BDGA 3BDGB 3UN5A 1N2LA 2GLQA 1ALJA 1AJAA 1HJKA 1ZEDA 3IGZB 1ALKA 3T00A 3OT9A 1KHKA 2IFYA 3MK0A 1KH4A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1O98 A;  3UNY A;  1ELY A;  1EW8 A;  1ELZ A;  3ED4 A;  1B8J A;  4FDJ A;  1KH9 A;  3MK1 A;  1EI6 A;  1SHN A;  3DPC A;  3M7V A;  1ANJ A;  1KH7 A;  3T02 A;  3TX0 A;  2G9Y A;  3BDH A;  1Y6V A;  1AJD A;  1FSU A;  1EQJ A;  1ELX A;  1HDH A;  1ED8 A;  1AUK A;  3IGY B;  1E33 P;  3NVL A;  1E1Z P;  1ZEF A;  1K7H A;  1EJJ A;  3M8Y A;  1EW2 A;  2QZU A;  1AJC A;  1O99 A;  1ZEB A;  1ALI A;  1E2S P;  3DYC A;  3M8Z A;  3MK2 A;  1HQA A;  3BDF A;  4FDI A;  1Y7A A;  3SZZ A;  3UN3 A;  1KHJ A;  3SZY A;  1P49 A;  3TWZ A;  3UO0 A;  3UN2 A;  2ANH A;  3T01 A;  1URB A;  1EW9 A;  1KHL A;  1ANI A;  1N2K A;  3M8W A;  1E3C P;  1ED9 A;  3CMR A;  2GA3 A;  1AJB A;  1URA A;  1KH5 A;  1SHQ A;  1KHN A;  3BDG A;  3BDG B;  3UN5 A;  1N2L A;  2GLQ A;  1ALJ A;  1AJA A;  1HJK A;  1ZED A;  3IGZ B;  1ALK A;  3T00 A;  3OT9 A;  1KHK A;  2IFY A;  3MK0 A;  1KH4 A; 
#chains in the KnotProt database with same CATH topology
 1O98 A;  3UNY A;  1ELY A;  1EW8 A;  1ELZ A;  3ED4 A;  1B8J A;  4FDJ A;  1KH9 A;  3MK1 A;  1EI6 A;  1SHN A;  3DPC A;  3M7V A;  1ANJ A;  1KH7 A;  3T02 A;  3TX0 A;  2G9Y A;  3BDH A;  1Y6V A;  1AJD A;  1FSU A;  1EQJ A;  1ELX A;  1HDH A;  1ED8 A;  1AUK A;  3IGY B;  1E33 P;  3NVL A;  1E1Z P;  1ZEF A;  1K7H A;  1EJJ A;  3M8Y A;  1EW2 A;  2QZU A;  1AJC A;  1O99 A;  1ZEB A;  1ALI A;  1E2S P;  3DYC A;  3M8Z A;  3MK2 A;  1HQA A;  3BDF A;  4FDI A;  1Y7A A;  3SZZ A;  3UN3 A;  1KHJ A;  3SZY A;  1P49 A;  3TWZ A;  3UO0 A;  3UN2 A;  2ANH A;  3T01 A;  1URB A;  1EW9 A;  1KHL A;  1ANI A;  1N2K A;  3M8W A;  1E3C P;  1ED9 A;  3CMR A;  2GA3 A;  1AJB A;  1URA A;  1KH5 A;  1SHQ A;  1KHN A;  3BDG A;  3BDG B;  3UN5 A;  1N2L A;  2GLQ A;  1ALJ A;  1AJA A;  1HJK A;  1ZED A;  3IGZ B;  1ALK A;  3T00 A;  3OT9 A;  1KHK A;  2IFY A;  3MK0 A;  1KH4 A; 
#chains in the KnotProt database with same CATH homology
 1O98 A;  3UNY A;  1ELY A;  1EW8 A;  1ELZ A;  3ED4 A;  1B8J A;  4FDJ A;  1KH9 A;  3MK1 A;  1EI6 A;  1SHN A;  3DPC A;  3M7V A;  1ANJ A;  1KH7 A;  3T02 A;  3TX0 A;  2G9Y A;  3BDH A;  1Y6V A;  1AJD A;  1FSU A;  1EQJ A;  1ELX A;  1HDH A;  1ED8 A;  1AUK A;  3IGY B;  1E33 P;  3NVL A;  1E1Z P;  1ZEF A;  1K7H A;  1EJJ A;  3M8Y A;  1EW2 A;  2QZU A;  1AJC A;  1O99 A;  1ZEB A;  1ALI A;  1E2S P;  3DYC A;  3M8Z A;  3MK2 A;  1HQA A;  3BDF A;  4FDI A;  1Y7A A;  3SZZ A;  3UN3 A;  1KHJ A;  3SZY A;  1P49 A;  3TWZ A;  3UO0 A;  3UN2 A;  2ANH A;  3T01 A;  1URB A;  1EW9 A;  1KHL A;  1ANI A;  1N2K A;  3M8W A;  1E3C P;  1ED9 A;  3CMR A;  2GA3 A;  1AJB A;  1URA A;  1KH5 A;  1SHQ A;  1KHN A;  3BDG A;  3BDG B;  3UN5 A;  1N2L A;  2GLQ A;  1ALJ A;  1AJA A;  1HJK A;  1ZED A;  3IGZ B;  1ALK A;  3T00 A;  3OT9 A;  1KHK A;  2IFY A;  3MK0 A;  1KH4 A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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