3MK0A

Refinement of placental alkaline phosphatase complexed with nitrophenyl
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 39-355 317 1-38 439-481 356-438 38 43 slipknot
Chain Sequence
IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTYAHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAKRQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHHESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYVLKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPPAG
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 39-358 320 1-38 437-481 359-436 38 45 slipknot
view details
3.1 36-436 401 1-35 439-481 437-438 35 43 slipknot
view details
2.1 36-438 403 1-35 441-481 439-440 35 41 slipknot
sequence length 481
structure length 481
publication title Refined structures of placental alkaline phosphatase show a consistent pattern of interactions at the peripheral site.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase, placental type
total genus Genus: 178
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-04-13
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3mk0A00
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 1EJJA 3T02A 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH superfamily
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 1EJJA 3T02A 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH topology
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 1EJJA 3T02A 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  1EJJ A;  3T02 A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
#chains in the KnotProt database with same CATH topology
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  1EJJ A;  3T02 A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
#chains in the KnotProt database with same CATH homology
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  1EJJ A;  3T02 A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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