3M8ZA

Phosphopentomutase from bacillus cereus bound with ribose-5-phosphate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-327 321 1-6 343-391 328-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 6-326 321 1-5 332-391 327-331 5 60 slipknot
view details
3.1 7-331 325 1-6 338-391 332-337 6 54 slipknot
view details
2.1 5-340 336 1-4 345-391 341-344 4 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 143
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-03-19
KnotProt deposition date 2014-07-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3m8zA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3m8zA01
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 1N2LA 1KHNA 3MK2A 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 1EJJA 3T02A 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 3M8ZA 1EW8A 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH superfamily
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 1N2LA 1KHNA 3MK2A 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 1EJJA 3T02A 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 3D7SD 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 3D7SB 3M8ZA 1EW8A 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH topology
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 1N2LA 1KHNA 3MK2A 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 1EJJA 3T02A 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 3M8ZA 1EW8A 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  1N2L A;  1KHN A;  3MK2 A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  1EJJ A;  3T02 A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  3M8Z A;  1EW8 A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
#chains in the KnotProt database with same CATH topology
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  1N2L A;  1KHN A;  3MK2 A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  1EJJ A;  3T02 A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  3D7S D;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  3D7S B;  3M8Z A;  1EW8 A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
#chains in the KnotProt database with same CATH homology
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  1N2L A;  1KHN A;  3MK2 A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  1EJJ A;  3T02 A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  3M8Z A;  1EW8 A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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