1KHNA

E. coli alkaline phosphatase mutant (d153hd330n) zinc form
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 42-363 322 1-41 414-444 364-413 41 31 slipknot
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 13-361 349 1-12 367-444 362-366 12 78 slipknot
view details
2.1 34-364 331 1-33 372-444 365-371 33 73 slipknot
view details
3.1 43-365 323 1-42 412-444 366-411 42 33 slipknot
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2.1 41-411 371 1-40 416-444 412-415 40 29 slipknot
view details
2.1 31-361 331 1-16, 365-444 17-30, 362-364 16 80 slipknot
view details
2.1 38-361 324 1-30, 366-444 31-37, 362-365 30 79 slipknot
sequence length 444
structure length 444
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase
source organism Escherichia coli
total genus Genus: 142
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-30
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1khnA00
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 1KHKA 1N2LA 3OT9A 3M8WA 4FDIA 1ANIA 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 3UN3A 2ANHA 2GLQA 1HJKA 1EI6A 1KHNA 3M8ZA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH superfamily
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 1KHKA 1N2LA 3OT9A 3M8WA 4FDIA 1ANIA 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 3UN3A 2ANHA 2GLQA 1HJKA 1EI6A 1KHNA 3M8ZA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH topology
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 1KHKA 1N2LA 3OT9A 3M8WA 4FDIA 1ANIA 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 3UN3A 2ANHA 2GLQA 1HJKA 1EI6A 1KHNA 3M8ZA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  1KHK A;  1N2L A;  3OT9 A;  3M8W A;  4FDI A;  1ANI A;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  3UN3 A;  2ANH A;  2GLQ A;  1HJK A;  1EI6 A;  1KHN A;  3M8Z A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
#chains in the KnotProt database with same CATH topology
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  1KHK A;  1N2L A;  3OT9 A;  3M8W A;  4FDI A;  1ANI A;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  3UN3 A;  2ANH A;  2GLQ A;  1HJK A;  1EI6 A;  1KHN A;  3M8Z A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
#chains in the KnotProt database with same CATH homology
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  1KHK A;  1N2L A;  3OT9 A;  3M8W A;  4FDI A;  1ANI A;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  3UN3 A;  2ANH A;  2GLQ A;  1HJK A;  1EI6 A;  1KHN A;  3M8Z A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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