3M8WA

Phosphopentomutase from bacillus cereus
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-328 322 1-6 343-391 329-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 5-327 323 1-4 332-391 328-331 4 60 slipknot
view details
2.1 6-328 323 1-2, 335-391 3-5, 329-334 2 57 slipknot
view details
2.1 5-336 332 1-4 340-391 337-339 4 52 slipknot
view details
4.3m 6-339 334 1-5 342-391 340-341 5 50 slipknot
view details
2.1 5-341 337 1-4 345-391 342-344 4 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 140
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-03-19
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3m8wA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3m8wA01
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 3OT9A 1KHKA 3M8WA 1N2LA 4FDIA 1ANIA 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 2ANHA 3UN3A 2GLQA 1HJKA 1EI6A 3M8ZA 1KHNA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH superfamily
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 3OT9A 1KHKA 3M8WA 1N2LA 4FDIA 1ANIA 3D7SD 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 2ANHA 3UN3A 2GLQA 1HJKA 1EI6A 3M8ZA 1KHNA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 3D7SB 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH topology
3SZZA 1ED9A 1ZEBA 1ANJA 1KH5A 1AJCA 1EW8A 1KH4A 1AUKA 1EQJA 1O98A 1ZEDA 3UNYA 3M7VA 1ZEFA 3MK0A 1KH7A 1FSUA 1B8JA 3BDHA 3ED4A 1E33P 3T02A 1AJDA 1K7HA 1AJBA 1KHLA 3T01A 3BDGB 1KHJA 3SZYA 3M8YA 1Y6VA 3DYCA 3OT9A 1KHKA 3M8WA 1N2LA 4FDIA 1ANIA 1ELZA 1Y7AA 3MK1A 1SHNA 1SHQA 2ANHA 3UN3A 2GLQA 1HJKA 1EI6A 3M8ZA 1KHNA 3T00A 2IFYA 1HQAA 3UN5A 3TX0A 2GA3A 1ALJA 3BDFA 1E3CP 3MK2A 1ALIA 1ED8A 3IGZB 3CMRA 1ELYA 3TWZA 3UN2A 2QZUA 1ELXA 3NVLA 3DPCA 1N2KA 1EJJA 2G9YA 3IGYB 4FDJA 1EW9A 1URBA 1EW2A 3BDGA 1O99A 1P49A 1E2SP 1ALKA 3UO0A 1URAA 1HDHA 1KH9A 1E1ZP 1AJAA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  3OT9 A;  1KHK A;  3M8W A;  1N2L A;  4FDI A;  1ANI A;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  2ANH A;  3UN3 A;  2GLQ A;  1HJK A;  1EI6 A;  3M8Z A;  1KHN A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
#chains in the KnotProt database with same CATH topology
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  3OT9 A;  1KHK A;  3M8W A;  1N2L A;  4FDI A;  1ANI A;  3D7S D;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  2ANH A;  3UN3 A;  2GLQ A;  1HJK A;  1EI6 A;  3M8Z A;  1KHN A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  3D7S B;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
#chains in the KnotProt database with same CATH homology
 3SZZ A;  1ED9 A;  1ZEB A;  1ANJ A;  1KH5 A;  1AJC A;  1EW8 A;  1KH4 A;  1AUK A;  1EQJ A;  1O98 A;  1ZED A;  3UNY A;  3M7V A;  1ZEF A;  3MK0 A;  1KH7 A;  1FSU A;  1B8J A;  3BDH A;  3ED4 A;  1E33 P;  3T02 A;  1AJD A;  1K7H A;  1AJB A;  1KHL A;  3T01 A;  3BDG B;  1KHJ A;  3SZY A;  3M8Y A;  1Y6V A;  3DYC A;  3OT9 A;  1KHK A;  3M8W A;  1N2L A;  4FDI A;  1ANI A;  1ELZ A;  1Y7A A;  3MK1 A;  1SHN A;  1SHQ A;  2ANH A;  3UN3 A;  2GLQ A;  1HJK A;  1EI6 A;  3M8Z A;  1KHN A;  3T00 A;  2IFY A;  1HQA A;  3UN5 A;  3TX0 A;  2GA3 A;  1ALJ A;  3BDF A;  1E3C P;  3MK2 A;  1ALI A;  1ED8 A;  3IGZ B;  3CMR A;  1ELY A;  3TWZ A;  3UN2 A;  2QZU A;  1ELX A;  3NVL A;  3DPC A;  1N2K A;  1EJJ A;  2G9Y A;  3IGY B;  4FDJ A;  1EW9 A;  1URB A;  1EW2 A;  3BDG A;  1O99 A;  1P49 A;  1E2S P;  1ALK A;  3UO0 A;  1URA A;  1HDH A;  1KH9 A;  1E1Z P;  1AJA A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling