3M8WA

Phosphopentomutase from bacillus cereus
Genus: 140
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 7-328 322 1-6 343-391 329-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 5-327 323 1-4 332-391 328-331 4 60 slipknot
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2.1 6-328 323 1-2, 335-391 3-5, 329-334 2 57 slipknot
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2.1 5-336 332 1-4 340-391 337-339 4 52 slipknot
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4.3m 6-339 334 1-5 342-391 340-341 5 50 slipknot
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2.1 5-341 337 1-4 345-391 342-344 4 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 140
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-03-19
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3m8wA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3m8wA01
3TX0A 1E3CP 3M8YA 1ELXA 3ED4A 1ZEFA 3TWZA 1HJKA 3M8ZA 3T01A 1K7HA 3OT9A 1P49A 3BDGB 3DPCA 2QZUA 3SZYA 3SZZA 1KH9A 1ALJA 1HDHA 1O98A 1E1ZP 3IGZB 2GLQA 3UO0A 2G9YA 3UN3A 1ANIA 3T00A 1EW9A 1Y7AA 1Y6VA 1KHNA 2ANHA 1KH5A 1ALIA 3BDFA 1AJBA 1AJCA 3IGYB 1KHLA 1KHKA 3DYCA 1B8JA 1O99A 1HQAA 1E2SP 1EJJA 2IFYA 1ELZA 3NVLA 1ED8A 3UNYA 3M7VA 3UN2A 1KH4A 3T02A 1KH7A 1N2LA 3BDHA 1E33P 1EW8A 1SHNA 1URAA 1SHQA 1ALKA 3MK1A 1EQJA 1EI6A 1N2KA 1ZEBA 3CMRA 1ELYA 1ANJA 3MK2A 4FDIA 1AJDA 1AUKA 3BDGA 1FSUA 3M8WA 1EW2A 1KHJA 1URBA 2GA3A 1AJAA 1ZEDA 3MK0A 3UN5A 4FDJA 1ED9A
chains in the KnotProt database with same CATH superfamily
3TX0A 1E3CP 3M8YA 1ELXA 3ED4A 1ZEFA 3TWZA 1HJKA 3M8ZA 3T01A 1K7HA 3OT9A 1P49A 3BDGB 3DPCA 2QZUA 3SZYA 3SZZA 1KH9A 1ALJA 1HDHA 1O98A 1E1ZP 3IGZB 2GLQA 3UO0A 2G9YA 3UN3A 1ANIA 3T00A 1EW9A 1Y7AA 3D7SB 1Y6VA 1KHNA 2ANHA 1KH5A 1ALIA 3BDFA 1AJBA 1AJCA 3IGYB 1KHLA 1KHKA 3DYCA 1B8JA 1O99A 1HQAA 1E2SP 1EJJA 2IFYA 1ELZA 3NVLA 1ED8A 3UNYA 3M7VA 3UN2A 1KH4A 3T02A 1KH7A 1N2LA 3BDHA 1E33P 1EW8A 1SHNA 1URAA 1SHQA 1ALKA 3MK1A 1EQJA 1EI6A 1N2KA 1ZEBA 3CMRA 1ELYA 1ANJA 3MK2A 4FDIA 1AJDA 1AUKA 3BDGA 1FSUA 3M8WA 1EW2A 1KHJA 1URBA 2GA3A 1AJAA 1ZEDA 3MK0A 3UN5A 4FDJA 3D7SD 1ED9A
chains in the KnotProt database with same CATH topology
3TX0A 1E3CP 3M8YA 1ELXA 3ED4A 1ZEFA 3TWZA 1HJKA 3M8ZA 3T01A 1K7HA 3OT9A 1P49A 3BDGB 3DPCA 2QZUA 3SZYA 3SZZA 1KH9A 1ALJA 1HDHA 1O98A 1E1ZP 3IGZB 2GLQA 3UO0A 2G9YA 3UN3A 1ANIA 3T00A 1EW9A 1Y7AA 1Y6VA 1KHNA 2ANHA 1KH5A 1ALIA 3BDFA 1AJBA 1AJCA 3IGYB 1KHLA 1KHKA 3DYCA 1B8JA 1O99A 1HQAA 1E2SP 1EJJA 2IFYA 1ELZA 3NVLA 1ED8A 3UNYA 3M7VA 3UN2A 1KH4A 3T02A 1KH7A 1N2LA 3BDHA 1E33P 1EW8A 1SHNA 1URAA 1SHQA 1ALKA 3MK1A 1EQJA 1EI6A 1N2KA 1ZEBA 3CMRA 1ELYA 1ANJA 3MK2A 4FDIA 1AJDA 1AUKA 3BDGA 1FSUA 3M8WA 1EW2A 1KHJA 1URBA 2GA3A 1AJAA 1ZEDA 3MK0A 3UN5A 4FDJA 1ED9A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 3TX0 A;  1E3C P;  3M8Y A;  1ELX A;  3ED4 A;  1ZEF A;  3TWZ A;  1HJK A;  3M8Z A;  3T01 A;  1K7H A;  3OT9 A;  1P49 A;  3BDG B;  3DPC A;  2QZU A;  3SZY A;  3SZZ A;  1KH9 A;  1ALJ A;  1HDH A;  1O98 A;  1E1Z P;  3IGZ B;  2GLQ A;  3UO0 A;  2G9Y A;  3UN3 A;  1ANI A;  3T00 A;  1EW9 A;  1Y7A A;  1Y6V A;  1KHN A;  2ANH A;  1KH5 A;  1ALI A;  3BDF A;  1AJB A;  1AJC A;  3IGY B;  1KHL A;  1KHK A;  3DYC A;  1B8J A;  1O99 A;  1HQA A;  1E2S P;  1EJJ A;  2IFY A;  1ELZ A;  3NVL A;  1ED8 A;  3UNY A;  3M7V A;  3UN2 A;  1KH4 A;  3T02 A;  1KH7 A;  1N2L A;  3BDH A;  1E33 P;  1EW8 A;  1SHN A;  1URA A;  1SHQ A;  1ALK A;  3MK1 A;  1EQJ A;  1EI6 A;  1N2K A;  1ZEB A;  3CMR A;  1ELY A;  1ANJ A;  3MK2 A;  4FDI A;  1AJD A;  1AUK A;  3BDG A;  1FSU A;  3M8W A;  1EW2 A;  1KHJ A;  1URB A;  2GA3 A;  1AJA A;  1ZED A;  3MK0 A;  3UN5 A;  4FDJ A;  1ED9 A; 
#chains in the KnotProt database with same CATH topology
 3TX0 A;  1E3C P;  3M8Y A;  1ELX A;  3ED4 A;  1ZEF A;  3TWZ A;  1HJK A;  3M8Z A;  3T01 A;  1K7H A;  3OT9 A;  1P49 A;  3BDG B;  3DPC A;  2QZU A;  3SZY A;  3SZZ A;  1KH9 A;  1ALJ A;  1HDH A;  1O98 A;  1E1Z P;  3IGZ B;  2GLQ A;  3UO0 A;  2G9Y A;  3UN3 A;  1ANI A;  3T00 A;  1EW9 A;  1Y7A A;  3D7S B;  1Y6V A;  1KHN A;  2ANH A;  1KH5 A;  1ALI A;  3BDF A;  1AJB A;  1AJC A;  3IGY B;  1KHL A;  1KHK A;  3DYC A;  1B8J A;  1O99 A;  1HQA A;  1E2S P;  1EJJ A;  2IFY A;  1ELZ A;  3NVL A;  1ED8 A;  3UNY A;  3M7V A;  3UN2 A;  1KH4 A;  3T02 A;  1KH7 A;  1N2L A;  3BDH A;  1E33 P;  1EW8 A;  1SHN A;  1URA A;  1SHQ A;  1ALK A;  3MK1 A;  1EQJ A;  1EI6 A;  1N2K A;  1ZEB A;  3CMR A;  1ELY A;  1ANJ A;  3MK2 A;  4FDI A;  1AJD A;  1AUK A;  3BDG A;  1FSU A;  3M8W A;  1EW2 A;  1KHJ A;  1URB A;  2GA3 A;  1AJA A;  1ZED A;  3MK0 A;  3UN5 A;  4FDJ A;  3D7S D;  1ED9 A; 
#chains in the KnotProt database with same CATH homology
 3TX0 A;  1E3C P;  3M8Y A;  1ELX A;  3ED4 A;  1ZEF A;  3TWZ A;  1HJK A;  3M8Z A;  3T01 A;  1K7H A;  3OT9 A;  1P49 A;  3BDG B;  3DPC A;  2QZU A;  3SZY A;  3SZZ A;  1KH9 A;  1ALJ A;  1HDH A;  1O98 A;  1E1Z P;  3IGZ B;  2GLQ A;  3UO0 A;  2G9Y A;  3UN3 A;  1ANI A;  3T00 A;  1EW9 A;  1Y7A A;  1Y6V A;  1KHN A;  2ANH A;  1KH5 A;  1ALI A;  3BDF A;  1AJB A;  1AJC A;  3IGY B;  1KHL A;  1KHK A;  3DYC A;  1B8J A;  1O99 A;  1HQA A;  1E2S P;  1EJJ A;  2IFY A;  1ELZ A;  3NVL A;  1ED8 A;  3UNY A;  3M7V A;  3UN2 A;  1KH4 A;  3T02 A;  1KH7 A;  1N2L A;  3BDH A;  1E33 P;  1EW8 A;  1SHN A;  1URA A;  1SHQ A;  1ALK A;  3MK1 A;  1EQJ A;  1EI6 A;  1N2K A;  1ZEB A;  3CMR A;  1ELY A;  1ANJ A;  3MK2 A;  4FDI A;  1AJD A;  1AUK A;  3BDG A;  1FSU A;  3M8W A;  1EW2 A;  1KHJ A;  1URB A;  2GA3 A;  1AJA A;  1ZED A;  3MK0 A;  3UN5 A;  4FDJ A;  1ED9 A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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