3SZYA

Crystal structure of phosphonoacetate hydrolase from sinorhizobium meliloti 1021 in apo form
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 26-247 222 1-25 383-413 248-382 25 31 slipknot
Chain Sequence
MSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 9-245 237 1-8 251-413 246-250 8 163 slipknot
view details
3.1 24-248 225 1-23 266-413 249-265 23 148 slipknot
view details
3.1 25-249 225 1-24 381-413 250-380 24 33 slipknot
view details
2.1 8-380 373 1-7 384-413 381-383 7 30 slipknot
view details
2.1 20-380 361 1-6, 385-413 7-19, 381-384 6 29 slipknot
view details
2.1 21-246 226 1-8, 249-413 9-20, 247-248 8 165 slipknot
view details
2.1 26-325 300 1-24, 334-413 25-25, 326-333 24 80 slipknot
sequence length 413
structure length 413
publication title Structural and mechanistic insights into C-p bond hydrolysis by phosphonoacetate hydrolase.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords phosphonoacetate hydrolase
source organism Sinorhizobium meliloti
total genus Genus: 130
ec nomenclature ec 3.6.1.9: Nucleotide diphosphatase.
pdb deposition date 2011-07-19
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.110 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Domain 2, Phosphonoacetate Hydrolase 3szyA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3szyA01
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 3MK2A 1N2LA 1KHNA 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 3T02A 1EJJA 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 1EW8A 3M8ZA 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH superfamily
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 3MK2A 1N2LA 1KHNA 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 3T02A 1EJJA 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 1EW8A 3M8ZA 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH topology
1AUKA 1E2SP 1HQAA 1AJCA 3M8WA 3BDGB 2IFYA 3BDGA 3IGYB 1ED8A 1E33P 3UN5A 3BDFA 1Y7AA 1KHLA 1O98A 3UO0A 3CMRA 2GA3A 1E1ZP 3MK2A 1N2LA 1KHNA 1Y6VA 3T01A 3ED4A 3M8YA 1ALIA 3SZYA 1ALKA 4FDJA 3MK0A 1ZEDA 3NVLA 3BDHA 1URAA 1EI6A 3MK1A 3TWZA 1URBA 1AJBA 1ELYA 1ED9A 1ZEFA 1KH5A 3TX0A 1O99A 3IGZB 3T02A 1EJJA 1P49A 1KH4A 1HDHA 3M7VA 3T00A 3UNYA 1SHQA 1ALHA 3DYCA 3DPCA 1N2KA 1KH9A 2QZUA 2GLQA 1ZEBA 1EW2A 1ANIA 3SZZA 1K7HA 3UN3A 1HJKA 1ALJA 1E3CP 1EW9A 1ANJA 1FSUA 1ELXA 1ELZA 1SHNA 1EQJA 1AJAA 2G9YA 1EW8A 3M8ZA 1AJDA 1KH7A 1KHKA 1B8JA 3UN2A 1KHJA 4FDIA 2ANHA 3OT9A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  3MK2 A;  1N2L A;  1KHN A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  3T02 A;  1EJJ A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  1EW8 A;  3M8Z A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
#chains in the KnotProt database with same CATH topology
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  3MK2 A;  1N2L A;  1KHN A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  3T02 A;  1EJJ A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  1EW8 A;  3M8Z A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
#chains in the KnotProt database with same CATH homology
 1AUK A;  1E2S P;  1HQA A;  1AJC A;  3M8W A;  3BDG B;  2IFY A;  3BDG A;  3IGY B;  1ED8 A;  1E33 P;  3UN5 A;  3BDF A;  1Y7A A;  1KHL A;  1O98 A;  3UO0 A;  3CMR A;  2GA3 A;  1E1Z P;  3MK2 A;  1N2L A;  1KHN A;  1Y6V A;  3T01 A;  3ED4 A;  3M8Y A;  1ALI A;  3SZY A;  1ALK A;  4FDJ A;  3MK0 A;  1ZED A;  3NVL A;  3BDH A;  1URA A;  1EI6 A;  3MK1 A;  3TWZ A;  1URB A;  1AJB A;  1ELY A;  1ED9 A;  1ZEF A;  1KH5 A;  3TX0 A;  1O99 A;  3IGZ B;  3T02 A;  1EJJ A;  1P49 A;  1KH4 A;  1HDH A;  3M7V A;  3T00 A;  3UNY A;  1SHQ A;  1ALH A;  3DYC A;  3DPC A;  1N2K A;  1KH9 A;  2QZU A;  2GLQ A;  1ZEB A;  1EW2 A;  1ANI A;  3SZZ A;  1K7H A;  3UN3 A;  1HJK A;  1ALJ A;  1E3C P;  1EW9 A;  1ANJ A;  1FSU A;  1ELX A;  1ELZ A;  1SHN A;  1EQJ A;  1AJA A;  2G9Y A;  1EW8 A;  3M8Z A;  1AJD A;  1KH7 A;  1KHK A;  1B8J A;  3UN2 A;  1KHJ A;  4FDI A;  2ANH A;  3OT9 A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling