3T00A

Crystal structure of phosphonoacetate hydrolase from sinorhizobium meliloti 1021 in complex with vanadate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 25-247 223 1-24 383-413 248-382 24 31 slipknot
Chain Sequence
MSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 24-247 224 1-23 263-413 248-262 23 151 slipknot
view details
3.1 25-248 224 1-24 338-413 249-337 24 76 slipknot
view details
3.1 25-337 313 1-24 382-413 338-381 24 32 slipknot
view details
2.1 26-320 295 1-24, 328-413 25-25, 321-327 24 86 slipknot
view details
2.1 26-328 303 1-24, 337-413 25-25, 329-336 24 77 slipknot
sequence length 413
structure length 413
publication title Structural and mechanistic insights into C-p bond hydrolysis by phosphonoacetate hydrolase.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords phosphonoacetate hydrolase
source organism Sinorhizobium meliloti
total genus Genus: 130
ec nomenclature ec 3.6.1.9: Nucleotide diphosphatase.
pdb deposition date 2011-07-19
KnotProt deposition date 2014-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01663 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.110 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 Domain 2, Phosphonoacetate Hydrolase 3t00A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3t00A01
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 3T02A 1EJJA 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH superfamily
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 3T02A 1EJJA 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH topology
1E2SP 1URBA 1EQJA 1KH4A 3UN3A 3IGYB 1HDHA 4FDJA 1AJCA 1O98A 1ELXA 1KH7A 1N2KA 1AUKA 2G9YA 1E33P 2QZUA 3T02A 1EJJA 1ALIA 1ELZA 1SHNA 1ZEDA 3MK1A 1KHNA 1P49A 1E3CP 3ED4A 1AJAA 1ELYA 1B8JA 1FSUA 1KHKA 1ED8A 3M8YA 3BDGB 3TX0A 1KHLA 1KH5A 1KHJA 3DYCA 1AJDA 3MK0A 1ED9A 3T00A 1EI6A 3SZZA 3BDFA 1O99A 3CMRA 3UNYA 1URAA 1EW9A 3TWZA 3UN2A 2GLQA 1ANIA 1SHQA 1ALKA 3OT9A 1EW8A 1ZEFA 1AJBA 1K7HA 3BDHA 1HJKA 1HQAA 3UN5A 3DPCA 3IGZB 1ANJA 1N2LA 2IFYA 1Y6VA 1ZEBA 1Y7AA 3M8WA 3UO0A 3BDGA 2ANHA 2GA3A 3NVLA 1E1ZP 3MK2A 1EW2A 1ALJA 1KH9A 3M8ZA 3SZYA 3T01A 4FDIA 3M7VA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  3T02 A;  1EJJ A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
#chains in the KnotProt database with same CATH topology
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  3T02 A;  1EJJ A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
#chains in the KnotProt database with same CATH homology
 1E2S P;  1URB A;  1EQJ A;  1KH4 A;  3UN3 A;  3IGY B;  1HDH A;  4FDJ A;  1AJC A;  1O98 A;  1ELX A;  1KH7 A;  1N2K A;  1AUK A;  2G9Y A;  1E33 P;  2QZU A;  3T02 A;  1EJJ A;  1ALI A;  1ELZ A;  1SHN A;  1ZED A;  3MK1 A;  1KHN A;  1P49 A;  1E3C P;  3ED4 A;  1AJA A;  1ELY A;  1B8J A;  1FSU A;  1KHK A;  1ED8 A;  3M8Y A;  3BDG B;  3TX0 A;  1KHL A;  1KH5 A;  1KHJ A;  3DYC A;  1AJD A;  3MK0 A;  1ED9 A;  3T00 A;  1EI6 A;  3SZZ A;  3BDF A;  1O99 A;  3CMR A;  3UNY A;  1URA A;  1EW9 A;  3TWZ A;  3UN2 A;  2GLQ A;  1ANI A;  1SHQ A;  1ALK A;  3OT9 A;  1EW8 A;  1ZEF A;  1AJB A;  1K7H A;  3BDH A;  1HJK A;  1HQA A;  3UN5 A;  3DPC A;  3IGZ B;  1ANJ A;  1N2L A;  2IFY A;  1Y6V A;  1ZEB A;  1Y7A A;  3M8W A;  3UO0 A;  3BDG A;  2ANH A;  2GA3 A;  3NVL A;  1E1Z P;  3MK2 A;  1EW2 A;  1ALJ A;  1KH9 A;  3M8Z A;  3SZY A;  3T01 A;  4FDI A;  3M7V A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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