1EJJA

Crystal structural analysis of phosphoglycerate mutase cocrystallized with 3-phosphoglycerate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-443 437 1-6 465-508 444-464 6 44 slipknot
Chain Sequence
KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 5-451 447 1-4 461-508 452-460 4 48 slipknot
sequence length 508
structure length 508
publication title Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords PHOSPHOGLYCERATE MUTASE
source organism Geobacillus stearothermophilus
total genus Genus: 196
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2000-03-02
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ejjA02
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 1ejjA01
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1HDHA 1E3CP 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH superfamily
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1HDHA 1E3CP 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH topology
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1KH9A 1P49A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1HDHA 1E3CP 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1HDH A;  1E3C P;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH topology
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1HDH A;  1E3C P;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH homology
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1KH9 A;  1P49 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1HDH A;  1E3C P;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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