1URA | KnotProt

Genus: 160

Slipknot S +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	45-366	322	1-44	417-446	367-416	44	30	slipknot

Chain Sequence

MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Viewer cachePut cache://localLOAD_/static/knot_data/1ura/A/1ura_A.pdb.gz

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	2.1	14-364	351	1-13	370-446	365-369	13	77	slipknot
view details	3.1	44-369	326	1-43	413-446	370-412	43	34	slipknot
view details	2.1	42-412	371	1-41	417-446	413-416	41	30	slipknot
view details	2.1	41-416	376	1-40	418-446	417-417	40	29	slipknot
view details	2.1	24-364	341		1-18, 370-446	19-23, 365-369	18	77	slipknot
view details	2.1	25-365	341		1-23, 370-446	24-24, 366-369	23	77	slipknot
view details	2.1	37-364	328		1-24, 370-446	25-36, 365-369	24	77	slipknot
view details	2.1	40-364	325		1-36, 370-446	37-39, 365-369	36	77	slipknot

sequence length	446
structure length	446
publication title	Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase. pubmed doi rcsb
molecule tags	Alkaline phosphatase
molecule keywords	ALKALINE PHOSPHATASE
source organism	Escherichia coli
total genus	Genus: 160
ec nomenclature	ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date	1996-02-03
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00245	Alk_phosphatase	Alkaline phosphatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	1uraA00

1E1ZP 3DYCA 1AJCA 1Y6VA 4FDIA 1KH9A 3BDFA 3MK1A 3NVLA 1ANJA 1KH5A 2ANHA 3T02A 1O99A 1E3CP 1Y7AA 1ZEBA 1EW2A 2GA3A 1KHJA 3IGYB 1N2KA 3M8ZA 3SZYA 3BDGA 3TWZA 3BDGB 3TX0A 3UN3A 1EI6A 2IFYA 1ELZA 1ANIA 3CMRA 3UO0A 3IGZB 3BDHA 4FDJA 1K7HA 1KHNA 1ZEFA 1SHNA 3UNYA 1KH4A 3MK2A 1ED9A 1ALIA 1AJBA 3T00A 1EW9A 2G9YA 3UN5A 1ELXA 1P49A 3DPCA 1AJAA 3M8YA 1N2LA 1B8JA 1EQJA 1ALKA 1FSUA 2QZUA 3ED4A 1URAA 1ZEDA 1SHQA 1AJDA 3M7VA 1ED8A 1KHKA 1ALJA 1ELYA 1E33P 3T01A 1EJJA 1KHLA 2GLQA 3OT9A 3M8WA 3MK0A 1HDHA 3UN2A 1E2SP 3SZZA 1KH7A 1URBA 1HJKA 1AUKA 1O98A 1HQAA 1EW8A
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH topology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH homology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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1URAA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁