1AJC | KnotProt

Genus: 160

Slipknot S +3₁

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Jmol Version: 14.29.13 2018-04-17 17:17

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	46-369	324	1-45	420-449	370-419	45	30	slipknot

Chain Sequence

TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQGATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGN---DSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Jmol Version: 14.29.13 2018-04-17 17:17

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java.version: 2018-01-28 23:38:52 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

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Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

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Jmol applet jmolApplet0__316897622438146__ ready

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	3.1	48-370	323	1-47	411-446	371-410	47	36	slipknot
view details	2.1	36-366	331		1-7, 371-446	8-35, 367-370	7	76	slipknot
view details	2.1	45-410	366		1-9, 418-446	10-44, 411-417	9	29	slipknot
view details	2.1	41-366	326		1-35, 371-446	36-40, 367-370	35	76	slipknot

sequence length	449
structure length	446
publication title	Crystallographic analysis of reversible metal binding observed in a mutant (Asp153-->Gly) of Escherichia coli alkaline phosphatase. pubmed doi rcsb
molecule tags	Non specific mono-esterase
molecule keywords	ALKALINE PHOSPHATASE
source organism	Escherichia coli
missing residues	405-407
total genus	Genus: 160
ec nomenclature	ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date	1995-07-18
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00245	Alk_phosphatase	Alkaline phosphatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	1ajcA00

1KH5A 3BDHA 3BDFA 2QZUA 1Y7AA 1E3CP 1EW2A 1K7HA 1HJKA 1KH7A 1ED9A 3M8WA 1ALKA 3BDGB 1O98A 1ALIA 3UN3A 1HQAA 1E1ZP 3UN2A 1HDHA 2ANHA 1KHKA 3SZYA 3UN5A 4FDIA 1AJDA 1EW9A 1ED8A 1AJBA 1Y6VA 3T01A 1ELYA 1SHNA 3IGZB 1EJJA 3SZZA 1KHLA 1KHJA 1ALJA 1ELZA 1AJAA 3MK0A 1E33P 1URAA 1URBA 3NVLA 3OT9A 1EW8A 2G9YA 3MK2A 3CMRA 3TX0A 3ED4A 3M8ZA 2GA3A 3M8YA 1E2SP 1ELXA 1P49A 1FSUA 1EQJA 2IFYA 1KH4A 1ANJA 1ZEFA 1ZEBA 3T00A 2GLQA 3MK1A 1N2LA 3BDGA 1ZEDA 1EI6A 3DYCA 3UO0A 1O99A 3M7VA 3UNYA 3IGYB 1B8JA 4FDJA 1SHQA 1ANIA 3TWZA 1KHNA 1AUKA 1N2KA 1AJCA 3T02A 3DPCA 1KH9A
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1KH5 A;  3BDH A;  3BDF A;  2QZU A;  1Y7A A;  1E3C P;  1EW2 A;  1K7H A;  1HJK A;  1KH7 A;  1ED9 A;  3M8W A;  1ALK A;  3BDG B;  1O98 A;  1ALI A;  3UN3 A;  1HQA A;  1E1Z P;  3UN2 A;  1HDH A;  2ANH A;  1KHK A;  3SZY A;  3UN5 A;  4FDI A;  1AJD A;  1EW9 A;  1ED8 A;  1AJB A;  1Y6V A;  3T01 A;  1ELY A;  1SHN A;  3IGZ B;  1EJJ A;  3SZZ A;  1KHL A;  1KHJ A;  1ALJ A;  1ELZ A;  1AJA A;  3MK0 A;  1E33 P;  1URA A;  1URB A;  3NVL A;  3OT9 A;  1EW8 A;  2G9Y A;  3MK2 A;  3CMR A;  3TX0 A;  3ED4 A;  3M8Z A;  2GA3 A;  3M8Y A;  1E2S P;  1ELX A;  1P49 A;  1FSU A;  1EQJ A;  2IFY A;  1KH4 A;  1ANJ A;  1ZEF A;  1ZEB A;  3T00 A;  2GLQ A;  3MK1 A;  1N2L A;  3BDG A;  1ZED A;  1EI6 A;  3DYC A;  3UO0 A;  1O99 A;  3M7V A;  3UNY A;  3IGY B;  1B8J A;  4FDJ A;  1SHQ A;  1ANI A;  3TWZ A;  1KHN A;  1AUK A;  1N2K A;  1AJC A;  3T02 A;  3DPC A;  1KH9 A; 
#chains in the KnotProt database with same CATH topology
 1KH5 A;  3BDH A;  3BDF A;  2QZU A;  1Y7A A;  1E3C P;  1EW2 A;  1K7H A;  1HJK A;  1KH7 A;  1ED9 A;  3M8W A;  1ALK A;  3BDG B;  1O98 A;  1ALI A;  3UN3 A;  1HQA A;  1E1Z P;  3UN2 A;  1HDH A;  2ANH A;  1KHK A;  3SZY A;  3UN5 A;  4FDI A;  1AJD A;  1EW9 A;  1ED8 A;  1AJB A;  1Y6V A;  3T01 A;  1ELY A;  1SHN A;  3IGZ B;  1EJJ A;  3SZZ A;  1KHL A;  1KHJ A;  1ALJ A;  1ELZ A;  1AJA A;  3MK0 A;  1E33 P;  1URA A;  1URB A;  3NVL A;  3OT9 A;  1EW8 A;  2G9Y A;  3MK2 A;  3CMR A;  3TX0 A;  3ED4 A;  3M8Z A;  2GA3 A;  3M8Y A;  1E2S P;  1ELX A;  1P49 A;  1FSU A;  1EQJ A;  2IFY A;  1KH4 A;  1ANJ A;  1ZEF A;  1ZEB A;  3T00 A;  2GLQ A;  3MK1 A;  1N2L A;  3BDG A;  1ZED A;  1EI6 A;  3DYC A;  3UO0 A;  1O99 A;  3M7V A;  3UNY A;  3IGY B;  1B8J A;  4FDJ A;  1SHQ A;  1ANI A;  3TWZ A;  1KHN A;  1AUK A;  1N2K A;  1AJC A;  3T02 A;  3DPC A;  1KH9 A; 
#chains in the KnotProt database with same CATH homology
 1KH5 A;  3BDH A;  3BDF A;  2QZU A;  1Y7A A;  1E3C P;  1EW2 A;  1K7H A;  1HJK A;  1KH7 A;  1ED9 A;  3M8W A;  1ALK A;  3BDG B;  1O98 A;  1ALI A;  3UN3 A;  1HQA A;  1E1Z P;  3UN2 A;  1HDH A;  2ANH A;  1KHK A;  3SZY A;  3UN5 A;  4FDI A;  1AJD A;  1EW9 A;  1ED8 A;  1AJB A;  1Y6V A;  3T01 A;  1ELY A;  1SHN A;  3IGZ B;  1EJJ A;  3SZZ A;  1KHL A;  1KHJ A;  1ALJ A;  1ELZ A;  1AJA A;  3MK0 A;  1E33 P;  1URA A;  1URB A;  3NVL A;  3OT9 A;  1EW8 A;  2G9Y A;  3MK2 A;  3CMR A;  3TX0 A;  3ED4 A;  3M8Z A;  2GA3 A;  3M8Y A;  1E2S P;  1ELX A;  1P49 A;  1FSU A;  1EQJ A;  2IFY A;  1KH4 A;  1ANJ A;  1ZEF A;  1ZEB A;  3T00 A;  2GLQ A;  3MK1 A;  1N2L A;  3BDG A;  1ZED A;  1EI6 A;  3DYC A;  3UO0 A;  1O99 A;  3M7V A;  3UNY A;  3IGY B;  1B8J A;  4FDJ A;  1SHQ A;  1ANI A;  3TWZ A;  1KHN A;  1AUK A;  1N2K A;  1AJC A;  3T02 A;  3DPC A;  1KH9 A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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1AJCA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁