1B8JA

Alkaline phosphatase complexed with vanadate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 46-369 324 1-45 420-449 370-419 45 30 slipknot
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDXAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 47-373 327 1-46 412-449 374-411 46 38 slipknot
view details
3.1 45-411 367 1-44 421-449 412-420 44 29 slipknot
view details
2.1 26-367 342 1-11, 373-449 12-25, 368-372 11 77 slipknot
view details
2.1 45-367 323 1-30, 373-449 31-44, 368-372 30 77 slipknot
publication title A model of the transition state in the alkaline phosphatase reaction.
pubmed doi rcsb
structure length 449
molecule tags Alkaline phosphatase
source organism Escherichia coli
sequence length 449
total genus Genus: 163
molecule keywords PROTEIN (ALKALINE PHOSPHATASE)
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1999-02-01
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1b8jA00
1EW8A 1ZEDA 1KHLA 1ED9A 4FDJA 1ANIA 2QZUA 1EI6A 1EW2A 3UNYA 3MK0A 1KHKA 3BDFA 1HDHA 1ALKA 3NVLA 1O98A 1Y7AA 1KH5A 3UN2A 1E33P 3OT9A 2ANHA 1AJBA 1N2KA 3UN5A 3T01A 1E1ZP 3M7VA 2GA3A 3M8ZA 1N2LA 3SZZA 3TWZA 1ANJA 3M8WA 1FSUA 1ALHA 1EQJA 3MK2A 1ZEFA 3UN3A 1URAA 1AJCA 3CMRA 1ELXA 2G9YA 1K7HA 1Y6VA 3IGZB 3TX0A 3UO0A 3SZYA 2GLQA 1AUKA 1ZEBA 1KHNA 1B8JA 3T02A 4FDIA 1EJJA 3DYCA 1HJKA 1ALIA 1EW9A 1ED8A 1HQAA 1KH7A 1P49A 3DPCA 3ED4A 3T00A 1URBA 1AJDA 3IGYB 3MK1A 1ELYA 1KHJA 3BDGA 1E3CP 1ALJA 1O99A 1KH4A 1E2SP 3BDHA 1SHQA 1SHNA 1AJAA 1ELZA 2IFYA 3M8YA 1KH9A 3BDGB
chains in the KnotProt database with same CATH superfamily
1EW8A 1ZEDA 1KHLA 1ED9A 4FDJA 1ANIA 2QZUA 1EI6A 1EW2A 3UNYA 3MK0A 1KHKA 3BDFA 1HDHA 1ALKA 3NVLA 1O98A 1Y7AA 1KH5A 3UN2A 1E33P 3OT9A 2ANHA 1AJBA 1N2KA 3UN5A 3T01A 1E1ZP 3M7VA 2GA3A 3M8ZA 1N2LA 3SZZA 3TWZA 1ANJA 3M8WA 1FSUA 1ALHA 1EQJA 3MK2A 1ZEFA 3UN3A 1URAA 1AJCA 3CMRA 1ELXA 2G9YA 1K7HA 1Y6VA 3IGZB 3TX0A 3UO0A 3SZYA 2GLQA 1AUKA 1ZEBA 1KHNA 1B8JA 3T02A 4FDIA 1EJJA 3DYCA 1HJKA 1ALIA 1EW9A 1ED8A 1HQAA 1KH7A 1P49A 3DPCA 3ED4A 3T00A 1URBA 1AJDA 3IGYB 3MK1A 1ELYA 1KHJA 3BDGA 1E3CP 1ALJA 1O99A 1KH4A 1E2SP 3BDHA 1SHQA 1SHNA 1AJAA 1ELZA 2IFYA 3M8YA 1KH9A 3BDGB
chains in the KnotProt database with same CATH topology
1EW8A 1ZEDA 1KHLA 1ED9A 4FDJA 1ANIA 2QZUA 1EI6A 1EW2A 3UNYA 3MK0A 1KHKA 3BDFA 1HDHA 1ALKA 3NVLA 1O98A 1Y7AA 1KH5A 3UN2A 1E33P 3OT9A 2ANHA 1AJBA 1N2KA 3UN5A 3T01A 1E1ZP 3M7VA 2GA3A 3M8ZA 1N2LA 3SZZA 3TWZA 1ANJA 3M8WA 1FSUA 1ALHA 1EQJA 3MK2A 1ZEFA 3UN3A 1URAA 1AJCA 3CMRA 1ELXA 2G9YA 1K7HA 1Y6VA 3IGZB 3TX0A 3UO0A 3SZYA 2GLQA 1AUKA 1ZEBA 1KHNA 1B8JA 3T02A 4FDIA 1EJJA 3DYCA 1HJKA 1ALIA 1EW9A 1ED8A 1HQAA 1KH7A 1P49A 3DPCA 3ED4A 3T00A 1URBA 1AJDA 3IGYB 3MK1A 1ELYA 1KHJA 3BDGA 1E3CP 1ALJA 1O99A 1KH4A 1E2SP 3BDHA 1SHQA 1SHNA 1AJAA 1ELZA 2IFYA 3M8YA 1KH9A 3BDGB
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1EW8 A;  1ZED A;  1KHL A;  1ED9 A;  4FDJ A;  1ANI A;  2QZU A;  1EI6 A;  1EW2 A;  3UNY A;  3MK0 A;  1KHK A;  3BDF A;  1HDH A;  1ALK A;  3NVL A;  1O98 A;  1Y7A A;  1KH5 A;  3UN2 A;  1E33 P;  3OT9 A;  2ANH A;  1AJB A;  1N2K A;  3UN5 A;  3T01 A;  1E1Z P;  3M7V A;  2GA3 A;  3M8Z A;  1N2L A;  3SZZ A;  3TWZ A;  1ANJ A;  3M8W A;  1FSU A;  1ALH A;  1EQJ A;  3MK2 A;  1ZEF A;  3UN3 A;  1URA A;  1AJC A;  3CMR A;  1ELX A;  2G9Y A;  1K7H A;  1Y6V A;  3IGZ B;  3TX0 A;  3UO0 A;  3SZY A;  2GLQ A;  1AUK A;  1ZEB A;  1KHN A;  1B8J A;  3T02 A;  4FDI A;  1EJJ A;  3DYC A;  1HJK A;  1ALI A;  1EW9 A;  1ED8 A;  1HQA A;  1KH7 A;  1P49 A;  3DPC A;  3ED4 A;  3T00 A;  1URB A;  1AJD A;  3IGY B;  3MK1 A;  1ELY A;  1KHJ A;  3BDG A;  1E3C P;  1ALJ A;  1O99 A;  1KH4 A;  1E2S P;  3BDH A;  1SHQ A;  1SHN A;  1AJA A;  1ELZ A;  2IFY A;  3M8Y A;  1KH9 A;  3BDG B; 
#chains in the KnotProt database with same CATH topology
 1EW8 A;  1ZED A;  1KHL A;  1ED9 A;  4FDJ A;  1ANI A;  2QZU A;  1EI6 A;  1EW2 A;  3UNY A;  3MK0 A;  1KHK A;  3BDF A;  1HDH A;  1ALK A;  3NVL A;  1O98 A;  1Y7A A;  1KH5 A;  3UN2 A;  1E33 P;  3OT9 A;  2ANH A;  1AJB A;  1N2K A;  3UN5 A;  3T01 A;  1E1Z P;  3M7V A;  2GA3 A;  3M8Z A;  1N2L A;  3SZZ A;  3TWZ A;  1ANJ A;  3M8W A;  1FSU A;  1ALH A;  1EQJ A;  3MK2 A;  1ZEF A;  3UN3 A;  1URA A;  1AJC A;  3CMR A;  1ELX A;  2G9Y A;  1K7H A;  1Y6V A;  3IGZ B;  3TX0 A;  3UO0 A;  3SZY A;  2GLQ A;  1AUK A;  1ZEB A;  1KHN A;  1B8J A;  3T02 A;  4FDI A;  1EJJ A;  3DYC A;  1HJK A;  1ALI A;  1EW9 A;  1ED8 A;  1HQA A;  1KH7 A;  1P49 A;  3DPC A;  3ED4 A;  3T00 A;  1URB A;  1AJD A;  3IGY B;  3MK1 A;  1ELY A;  1KHJ A;  3BDG A;  1E3C P;  1ALJ A;  1O99 A;  1KH4 A;  1E2S P;  3BDH A;  1SHQ A;  1SHN A;  1AJA A;  1ELZ A;  2IFY A;  3M8Y A;  1KH9 A;  3BDG B; 
#chains in the KnotProt database with same CATH homology
 1EW8 A;  1ZED A;  1KHL A;  1ED9 A;  4FDJ A;  1ANI A;  2QZU A;  1EI6 A;  1EW2 A;  3UNY A;  3MK0 A;  1KHK A;  3BDF A;  1HDH A;  1ALK A;  3NVL A;  1O98 A;  1Y7A A;  1KH5 A;  3UN2 A;  1E33 P;  3OT9 A;  2ANH A;  1AJB A;  1N2K A;  3UN5 A;  3T01 A;  1E1Z P;  3M7V A;  2GA3 A;  3M8Z A;  1N2L A;  3SZZ A;  3TWZ A;  1ANJ A;  3M8W A;  1FSU A;  1ALH A;  1EQJ A;  3MK2 A;  1ZEF A;  3UN3 A;  1URA A;  1AJC A;  3CMR A;  1ELX A;  2G9Y A;  1K7H A;  1Y6V A;  3IGZ B;  3TX0 A;  3UO0 A;  3SZY A;  2GLQ A;  1AUK A;  1ZEB A;  1KHN A;  1B8J A;  3T02 A;  4FDI A;  1EJJ A;  3DYC A;  1HJK A;  1ALI A;  1EW9 A;  1ED8 A;  1HQA A;  1KH7 A;  1P49 A;  3DPC A;  3ED4 A;  3T00 A;  1URB A;  1AJD A;  3IGY B;  3MK1 A;  1ELY A;  1KHJ A;  3BDG A;  1E3C P;  1ALJ A;  1O99 A;  1KH4 A;  1E2S P;  3BDH A;  1SHQ A;  1SHN A;  1AJA A;  1ELZ A;  2IFY A;  3M8Y A;  1KH9 A;  3BDG B; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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