1HJK | KnotProt

Genus: 152

Slipknot S +3₁

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setting document base to "https://knotprot.cent.uw.edu.pl/view/1hjk/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	46-369	324	1-45	419-449	370-418	45	31	slipknot

Chain Sequence

TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDQAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK

Whole chain analysis

Help Knotoid data interpretation Full screen

Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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AppletRegistry.checkIn(jmolApplet0__0057676979459762__)

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Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol getValue boxbgcolor null

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Viewer cachePut cache://localLOAD_/static/knot_data/1hjk/A/1hjk_A.pdb.gz

Viewer cachePut https://knotprot.cent.uw.edu.pl/static/knot_data/1hjk/A/1hjk_A.pdb.gz

FileManager.getAtomSetCollectionFromFile(/static/knot_data/1hjk/A/1hjk_A.pdb.gz)

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/static/knot_data/1hjk/A/1hjk_A.pdb.gz): 592 ms

reading 449 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

449 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 29 ms

Adding embedded #jmolscript: select ({0:448});backbone only;select *;

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Viewer cachePut cache://localLOAD_/static/knot_data/1hjk/A/1hjk_A.pdb.gz

Viewer cachePut https://knotprot.cent.uw.edu.pl/static/knot_data/1hjk/A/1hjk_A.pdb.gz

Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	3.1	46-370	325	1-45	389-449	371-388	45	61	slipknot
view details	3.1	47-371	325	1-46	415-449	372-414	46	35	slipknot
view details	2.1	45-414	370	1-44	421-449	415-420	44	29	slipknot
view details	2.1	24-366	343		1-6, 371-449	7-23, 367-370	6	79	slipknot
view details	2.1	41-366	326		1-23, 371-449	24-40, 367-370	23	79	slipknot

sequence length	449
structure length	449
publication title	Trapping and visualization of a covalent enzyme-phosphate intermediate. pubmed doi rcsb
molecule tags	Hydrolase
molecule keywords	ALKALINE PHOSPHATASE
source organism	Escherichia coli
total genus	Genus: 152
ec nomenclature	ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date	1997-05-30
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00245	Alk_phosphatase	Alkaline phosphatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	1hjkA00

1E1ZP 3DYCA 1AJCA 1Y6VA 4FDIA 1KH9A 3BDFA 3MK1A 3NVLA 1ANJA 1KH5A 2ANHA 3T02A 1O99A 1E3CP 1Y7AA 1ZEBA 1EW2A 2GA3A 1KHJA 3IGYB 1N2KA 3M8ZA 3SZYA 3BDGA 3TWZA 3BDGB 3TX0A 3UN3A 1EI6A 2IFYA 1ELZA 1ANIA 3CMRA 3UO0A 3IGZB 3BDHA 4FDJA 1K7HA 1KHNA 1ZEFA 1SHNA 3UNYA 1KH4A 3MK2A 1ED9A 1ALIA 1AJBA 3T00A 1EW9A 2G9YA 3UN5A 1ELXA 1P49A 3DPCA 1AJAA 3M8YA 1N2LA 1B8JA 1EQJA 1ALKA 1FSUA 2QZUA 3ED4A 1URAA 1ZEDA 1SHQA 1AJDA 3M7VA 1ED8A 1KHKA 1ALJA 1ELYA 1E33P 3T01A 1EJJA 1KHLA 2GLQA 3OT9A 3M8WA 3MK0A 1HDHA 3UN2A 1E2SP 3SZZA 1KH7A 1URBA 1HJKA 1AUKA 1O98A 1HQAA 1EW8A
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH topology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH homology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  1N2K A;  3M8Z A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  1HDH A;  3UN2 A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A;

1B8JA 1ED8A 1ED9A 1EW8A 1EW9A 1Y6VA 3BDGB 3BDHA 3TG0A
similar chains in the KnotProt database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1B8J A; 1ED8 A; 1ED9 A; 1EW8 A; 1EW9 A; 1Y6V A; 3BDG B; 3BDH A; 3TG0 A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

1HJKA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁