1O98A

1.4a crystal structure of phosphoglycerate mutase from bacillus stearothermophilus complexed with 2-phosphoglycerate
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 8-444 437 1-7 466-509 445-465 7 44 slipknot
Chain Sequence
SKKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 7-448 442 1-6 464-509 449-463 6 46 slipknot
view details
2.1 4-463 460 1-3 468-509 464-467 3 42 slipknot
sequence length 509
structure length 509
publication title Insights Into the Catalytic Mechanism of Cofactor-Independent Phosphoglycerate Mutase from X-Ray Crystallography, Simulated Dynamics and Molecular Modeling
pubmed doi rcsb
molecule tags Isomerase
molecule keywords 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
source organism Bacillus stearothermophilus
total genus Genus: 199
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2002-12-11
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1o98A02
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 1o98A01
1KHKA 1P49A 3SZZA 3MK2A 3SZYA 1ELYA 1ANIA 1URBA 1AJCA 3UN3A 3BDGA 3M7VA 2IFYA 1N2KA 1EW2A 1KH5A 1KHJA 4FDIA 4FDJA 1HJKA 2GLQA 3TWZA 1ED9A 3M8ZA 1HQAA 3ED4A 1SHQA 3MK0A 1ELZA 1EI6A 1ZEFA 3BDHA 2GA3A 1AJDA 1Y6VA 3NVLA 1AJAA 2QZUA 1KH4A 1E1ZP 3UO0A 1O98A 3M8WA 1ANJA 1EQJA 1ELXA 1K7HA 3DPCA 1AUKA 1Y7AA 1ALKA 3CMRA 1KH9A 1ALJA 1EW8A 3TX0A 3UN2A 1KHNA 1EJJA 3T01A 1ED8A 3IGZB 1FSUA 1E2SP 1SHNA 1EW9A 1O99A 3MK1A 3UN5A 3T02A 1ZEBA 1KHLA 3DYCA 1HDHA 2G9YA 1B8JA 3UNYA 1ALIA 1KH7A 1N2LA 3IGYB 3BDGB 3BDFA 1E3CP 1E33P 3M8YA 2ANHA 1AJBA 3T00A 1ZEDA 1URAA 3OT9A
chains in the KnotProt database with same CATH superfamily
1KHKA 1P49A 3SZZA 3MK2A 3SZYA 1ELYA 1ANIA 1URBA 1AJCA 3UN3A 3BDGA 3M7VA 2IFYA 1N2KA 1EW2A 1KH5A 1KHJA 4FDIA 4FDJA 1HJKA 2GLQA 3TWZA 1ED9A 3M8ZA 1HQAA 3ED4A 1SHQA 3MK0A 1ELZA 1EI6A 1ZEFA 3BDHA 2GA3A 1AJDA 1Y6VA 3NVLA 1AJAA 2QZUA 1KH4A 1E1ZP 3UO0A 1O98A 3M8WA 1ANJA 1EQJA 1ELXA 1K7HA 3DPCA 1AUKA 1Y7AA 1ALKA 3CMRA 1KH9A 1ALJA 1EW8A 3TX0A 3UN2A 1KHNA 1EJJA 3T01A 1ED8A 3IGZB 1FSUA 1E2SP 1SHNA 1EW9A 1O99A 3MK1A 3UN5A 3T02A 1ZEBA 1KHLA 3DYCA 1HDHA 2G9YA 1B8JA 3UNYA 1ALIA 1KH7A 1N2LA 3IGYB 3BDGB 3BDFA 1E3CP 1E33P 3M8YA 2ANHA 1AJBA 3T00A 1ZEDA 1URAA 3OT9A
chains in the KnotProt database with same CATH topology
1KHKA 1P49A 3SZZA 3MK2A 3SZYA 1ELYA 1ANIA 1URBA 1AJCA 3UN3A 3BDGA 3M7VA 2IFYA 1N2KA 1EW2A 1KH5A 1KHJA 4FDIA 4FDJA 1HJKA 2GLQA 3TWZA 1ED9A 3M8ZA 1HQAA 3ED4A 1SHQA 3MK0A 1ELZA 1EI6A 1ZEFA 3BDHA 2GA3A 1AJDA 1Y6VA 3NVLA 1AJAA 2QZUA 1KH4A 1E1ZP 3UO0A 1O98A 3M8WA 1ANJA 1EQJA 1ELXA 1K7HA 3DPCA 1AUKA 1Y7AA 1ALKA 3CMRA 1KH9A 1ALJA 1EW8A 3TX0A 3UN2A 1KHNA 1EJJA 3T01A 1ED8A 3IGZB 1FSUA 1E2SP 1SHNA 1EW9A 1O99A 3MK1A 3UN5A 3T02A 1ZEBA 1KHLA 3DYCA 1HDHA 2G9YA 1B8JA 3UNYA 1ALIA 1KH7A 1N2LA 3IGYB 3BDGB 3BDFA 1E3CP 1E33P 3M8YA 2ANHA 1AJBA 3T00A 1ZEDA 1URAA 3OT9A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1KHK A;  1P49 A;  3SZZ A;  3MK2 A;  3SZY A;  1ELY A;  1ANI A;  1URB A;  1AJC A;  3UN3 A;  3BDG A;  3M7V A;  2IFY A;  1N2K A;  1EW2 A;  1KH5 A;  1KHJ A;  4FDI A;  4FDJ A;  1HJK A;  2GLQ A;  3TWZ A;  1ED9 A;  3M8Z A;  1HQA A;  3ED4 A;  1SHQ A;  3MK0 A;  1ELZ A;  1EI6 A;  1ZEF A;  3BDH A;  2GA3 A;  1AJD A;  1Y6V A;  3NVL A;  1AJA A;  2QZU A;  1KH4 A;  1E1Z P;  3UO0 A;  1O98 A;  3M8W A;  1ANJ A;  1EQJ A;  1ELX A;  1K7H A;  3DPC A;  1AUK A;  1Y7A A;  1ALK A;  3CMR A;  1KH9 A;  1ALJ A;  1EW8 A;  3TX0 A;  3UN2 A;  1KHN A;  1EJJ A;  3T01 A;  1ED8 A;  3IGZ B;  1FSU A;  1E2S P;  1SHN A;  1EW9 A;  1O99 A;  3MK1 A;  3UN5 A;  3T02 A;  1ZEB A;  1KHL A;  3DYC A;  1HDH A;  2G9Y A;  1B8J A;  3UNY A;  1ALI A;  1KH7 A;  1N2L A;  3IGY B;  3BDG B;  3BDF A;  1E3C P;  1E33 P;  3M8Y A;  2ANH A;  1AJB A;  3T00 A;  1ZED A;  1URA A;  3OT9 A; 
#chains in the KnotProt database with same CATH topology
 1KHK A;  1P49 A;  3SZZ A;  3MK2 A;  3SZY A;  1ELY A;  1ANI A;  1URB A;  1AJC A;  3UN3 A;  3BDG A;  3M7V A;  2IFY A;  1N2K A;  1EW2 A;  1KH5 A;  1KHJ A;  4FDI A;  4FDJ A;  1HJK A;  2GLQ A;  3TWZ A;  1ED9 A;  3M8Z A;  1HQA A;  3ED4 A;  1SHQ A;  3MK0 A;  1ELZ A;  1EI6 A;  1ZEF A;  3BDH A;  2GA3 A;  1AJD A;  1Y6V A;  3NVL A;  1AJA A;  2QZU A;  1KH4 A;  1E1Z P;  3UO0 A;  1O98 A;  3M8W A;  1ANJ A;  1EQJ A;  1ELX A;  1K7H A;  3DPC A;  1AUK A;  1Y7A A;  1ALK A;  3CMR A;  1KH9 A;  1ALJ A;  1EW8 A;  3TX0 A;  3UN2 A;  1KHN A;  1EJJ A;  3T01 A;  1ED8 A;  3IGZ B;  1FSU A;  1E2S P;  1SHN A;  1EW9 A;  1O99 A;  3MK1 A;  3UN5 A;  3T02 A;  1ZEB A;  1KHL A;  3DYC A;  1HDH A;  2G9Y A;  1B8J A;  3UNY A;  1ALI A;  1KH7 A;  1N2L A;  3IGY B;  3BDG B;  3BDF A;  1E3C P;  1E33 P;  3M8Y A;  2ANH A;  1AJB A;  3T00 A;  1ZED A;  1URA A;  3OT9 A; 
#chains in the KnotProt database with same CATH homology
 1KHK A;  1P49 A;  3SZZ A;  3MK2 A;  3SZY A;  1ELY A;  1ANI A;  1URB A;  1AJC A;  3UN3 A;  3BDG A;  3M7V A;  2IFY A;  1N2K A;  1EW2 A;  1KH5 A;  1KHJ A;  4FDI A;  4FDJ A;  1HJK A;  2GLQ A;  3TWZ A;  1ED9 A;  3M8Z A;  1HQA A;  3ED4 A;  1SHQ A;  3MK0 A;  1ELZ A;  1EI6 A;  1ZEF A;  3BDH A;  2GA3 A;  1AJD A;  1Y6V A;  3NVL A;  1AJA A;  2QZU A;  1KH4 A;  1E1Z P;  3UO0 A;  1O98 A;  3M8W A;  1ANJ A;  1EQJ A;  1ELX A;  1K7H A;  3DPC A;  1AUK A;  1Y7A A;  1ALK A;  3CMR A;  1KH9 A;  1ALJ A;  1EW8 A;  3TX0 A;  3UN2 A;  1KHN A;  1EJJ A;  3T01 A;  1ED8 A;  3IGZ B;  1FSU A;  1E2S P;  1SHN A;  1EW9 A;  1O99 A;  3MK1 A;  3UN5 A;  3T02 A;  1ZEB A;  1KHL A;  3DYC A;  1HDH A;  2G9Y A;  1B8J A;  3UNY A;  1ALI A;  1KH7 A;  1N2L A;  3IGY B;  3BDG B;  3BDF A;  1E3C P;  1E33 P;  3M8Y A;  2ANH A;  1AJB A;  3T00 A;  1ZED A;  1URA A;  3OT9 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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