2QZU | KnotProt

Genus: 150

Slipknot S +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	14-296	283	1-13	320-465	297-319	13	146	slipknot

Chain Sequence

GLQAQEKQPTPNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGMLMTGMYPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGYNMGYIGKWHLDAPYKPYVDTYNNRGKVAWNEWCPPERRHGFDHWIAYGTYDYHLKPMYWNTTAPRDSFYYVNQWGPEYEASKAIEYINGQKDQKQPFALVVSMNPPHTGYELVPDRYKEIYKDLDVEALCKGRPDIPAKGTEMGDYFRNNIRNYYACITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGICMGAHENAGKDIFYEESMRIPMILSWPDQIKPRKSDPLMIAFADLYPTLLSMMGFSKEIPETVQTFDLSNEVLTGKNKKDLVQPYYFVKFDNHATGYRGLRTDRYTYAVHATDGKIDNVILFDRTNDPHEMNNIASQQLKLTHTFNRQLKTWLEKTNDPFAQYIKL

Whole chain analysis

Help Knotoid data interpretation Full screen

Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Viewer cachePut cache://localLOAD_/static/knot_data/2qzu/A/2qzu_A.pdb.gz

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	2.1	11-294	284	1-10	300-465	295-299	10	166	slipknot
view details	3.1	13-296	284	1-12	319-465	297-318	12	147	slipknot
view details	3.1	12-318	307	1-11	320-465	319-319	11	146	slipknot
view details	2.1	9-319	311		1-3, 321-465	4-8, 320-320	3	145	slipknot
view details	2.1	8-320	313		1-2, 322-465	3-7, 321-321	2	144	slipknot
view details	2.1	11-319	309		1-8, 321-465	9-10, 320-320	8	145	slipknot
view details	3.1	14-309	296		1-12, 313-465	13-13, 310-312	12	153	slipknot

sequence length	465
structure length	465
publication title	X-ray crystal structure of the putative sulfatase yidJ from Bacteroides fragilis. rcsb
molecule tags	Hydrolase
molecule keywords	Putative sulfatase yidJ
source organism	Bacteroides fragilis
total genus	Genus: 150
ec nomenclature
pdb deposition date	2007-08-17
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00884	Sulfatase	Sulfatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1120.10	Alpha Beta	2-Layer Sandwich	Arylsulfatase, C-terminal domain	Arylsulfatase, C-terminal domain	2qzuA02
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	2qzuA01

3BDGA 1EJJA 1EW2A 2G9YA 1O98A 1ED8A 1ANJA 1ELXA 3MK0A 1FSUA 3T00A 1E33P 1SHQA 3UN2A 1HDHA 1Y7AA 1KHKA 3DPCA 3UN5A 3ED4A 2IFYA 3UO0A 1E3CP 3IGZB 1HJKA 3TWZA 1AJDA 1AJBA 1E1ZP 3T02A 1EW8A 3MK1A 1KH4A 1EI6A 3NVLA 4FDIA 2ANHA 3SZYA 4FDJA 3CMRA 3DYCA 2QZUA 1KHNA 1ALJA 1ELZA 3M8ZA 1Y6VA 1AJCA 1ALIA 3IGYB 3SZZA 2GA3A 1P49A 1KHLA 1URAA 1AJAA 1KH7A 1E2SP 3BDHA 3TX0A 1K7HA 1URBA 1N2KA 1KH5A 1EQJA 1ZEDA 1ZEBA 1ANIA 3M8WA 1EW9A 1ELYA 3OT9A 1HQAA 1B8JA 3T01A 3M8YA 1KH9A 1SHNA 3BDFA 1ZEFA 3UN3A 1ED9A 1ALKA 3UNYA 1N2LA 1O99A 1AUKA 3M7VA 3BDGB 3MK2A 1KHJA 2GLQA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  3ED4 A;  2IFY A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  1E1Z P;  3T02 A;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  4FDI A;  2ANH A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1P49 A;  1KHL A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  3OT9 A;  1HQA A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A; 
#chains in the KnotProt database with same CATH topology
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  3ED4 A;  2IFY A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  1E1Z P;  3T02 A;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  4FDI A;  2ANH A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1P49 A;  1KHL A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  3OT9 A;  1HQA A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A; 
#chains in the KnotProt database with same CATH homology
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  3ED4 A;  2IFY A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  1E1Z P;  3T02 A;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  4FDI A;  2ANH A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1P49 A;  1KHL A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  3OT9 A;  1HQA A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A;

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similar chains in the KnotProt database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2QZUA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁