| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 14-296 | 283 | 1-13 | 320-465 | 297-319 | 13 | 146 | slipknot |
Chain Sequence |
GLQAQEKQPTPNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGMLMTGMYPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGYNMGYIGKWHLDAPYKPYVDTYNNRGKVAWNEWCPPERRHGFDHWIAYGTYDYHLKPMYWNTTAPRDSFYYVNQWGPEYEASKAIEYINGQKDQKQPFALVVSMNPPHTGYELVPDRYKEIYKDLDVEALCKGRPDIPAKGTEMGDYFRNNIRNYYACITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGICMGAHENAGKDIFYEESMRIPMILSWPDQIKPRKSDPLMIAFADLYPTLLSMMGFSKEIPETVQTFDLSNEVLTGKNKKDLVQPYYFVKFDNHATGYRGLRTDRYTYAVHATDGKIDNVILFDRTNDPHEMNNIASQQLKLTHTFNRQLKTWLEKTNDPFAQYIKL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 11-294 | 284 | 1-10 | 300-465 | 295-299 | 10 | 166 | slipknot | ||
| view details |
 |
3.1 | 13-296 | 284 | 1-12 | 319-465 | 297-318 | 12 | 147 | slipknot | ||
| view details |
|
3.1 | 12-318 | 307 | 1-11 | 320-465 | 319-319 | 11 | 146 | slipknot | ||
| view details |
|
2.1 | 9-319 | 311 | 1-3, 321-465 | 4-8, 320-320 | 3 | 145 | slipknot | |||
| view details |
|
2.1 | 8-320 | 313 | 1-2, 322-465 | 3-7, 321-321 | 2 | 144 | slipknot | |||
| view details |
|
2.1 | 11-319 | 309 | 1-8, 321-465 | 9-10, 320-320 | 8 | 145 | slipknot | |||
| view details |
|
3.1 | 14-309 | 296 | 1-12, 313-465 | 13-13, 310-312 | 12 | 153 | slipknot |
| sequence length |
465
|
| structure length |
465
|
| publication title |
X-ray crystal structure of the putative sulfatase yidJ from Bacteroides fragilis.
rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Putative sulfatase yidJ
|
| source organism |
Bacteroides fragilis
|
| total genus |
 Genus: 150
|
| ec nomenclature | |
| pdb deposition date | 2007-08-17 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00884 | Sulfatase | Sulfatase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Arylsulfatase, C-terminal domain | Arylsulfatase, C-terminal domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Alkaline Phosphatase, subunit A | Alkaline Phosphatase, subunit A |
#chains in the KnotProt database with same CATH superfamily 3BDH A; 3M8Z A; 1ALI A; 3M8W A; 1ANI A; 1AJB A; 4FDJ A; 3DPC A; 1ALK A; 1EW2 A; 1ZED A; 1HQA A; 1EW9 A; 1E33 P; 3UNY A; 1HDH A; 3T02 A; 1Y7A A; 3T00 A; 1ZEF A; 1ED9 A; 1SHN A; 1EW8 A; 3TX0 A; 3UN3 A; 1ELZ A; 2GLQ A; 1KH5 A; 1KHL A; 3UO0 A; 1Y6V A; 3UN5 A; 3OT9 A; 3UN2 A; 1ZEB A; 1N2K A; 2G9Y A; 3MK1 A; 3TWZ A; 3BDF A; 1E1Z P; 3T01 A; 3ED4 A; 1B8J A; 1KH9 A; 2QZU A; 1KHJ A; 1ALJ A; 3M8Y A; 1KH4 A; 3CMR A; 1E3C P; 1O99 A; 3IGY B; 1AUK A; 3IGZ B; 1N2L A; 2GA3 A; 2IFY A; 3SZZ A; 1KHK A; 3M7V A; 1ELY A; 3MK2 A; 1P49 A; 1KHN A; 3BDG A; 4FDI A; 1KH7 A; 3NVL A; 1E2S P; 1URA A; 1EJJ A; 1K7H A; 3DYC A; 1ELX A; 1AJC A; 1AJA A; 2ANH A; 3MK0 A; 1EQJ A; 1SHQ A; 1ED8 A; 1ANJ A; 1AJD A; 1O98 A; 3BDG B; 3SZY A; 1HJK A; 1EI6 A; 1FSU A; 1URB A; #chains in the KnotProt database with same CATH topology 3BDH A; 3M8Z A; 1ALI A; 3M8W A; 1ANI A; 1AJB A; 4FDJ A; 3DPC A; 1ALK A; 1EW2 A; 1ZED A; 1HQA A; 1EW9 A; 1E33 P; 3UNY A; 1HDH A; 3T02 A; 1Y7A A; 3T00 A; 1ZEF A; 1ED9 A; 1SHN A; 1EW8 A; 3TX0 A; 3UN3 A; 1ELZ A; 2GLQ A; 1KH5 A; 1KHL A; 3UO0 A; 1Y6V A; 3UN5 A; 3OT9 A; 3UN2 A; 1ZEB A; 1N2K A; 2G9Y A; 3MK1 A; 3TWZ A; 3BDF A; 1E1Z P; 3T01 A; 3ED4 A; 1B8J A; 1KH9 A; 2QZU A; 1KHJ A; 1ALJ A; 3M8Y A; 1KH4 A; 3CMR A; 1E3C P; 1O99 A; 3IGY B; 1AUK A; 3IGZ B; 1N2L A; 2GA3 A; 2IFY A; 3SZZ A; 1KHK A; 3M7V A; 1ELY A; 3MK2 A; 1P49 A; 1KHN A; 3BDG A; 4FDI A; 1KH7 A; 3NVL A; 1E2S P; 1URA A; 1EJJ A; 1K7H A; 3DYC A; 1ELX A; 1AJC A; 1AJA A; 2ANH A; 3MK0 A; 1EQJ A; 1SHQ A; 1ED8 A; 1ANJ A; 1AJD A; 1O98 A; 3BDG B; 3SZY A; 1HJK A; 1EI6 A; 1FSU A; 1URB A; #chains in the KnotProt database with same CATH homology 3BDH A; 3M8Z A; 1ALI A; 3M8W A; 1ANI A; 1AJB A; 4FDJ A; 3DPC A; 1ALK A; 1EW2 A; 1ZED A; 1HQA A; 1EW9 A; 1E33 P; 3UNY A; 1HDH A; 3T02 A; 1Y7A A; 3T00 A; 1ZEF A; 1ED9 A; 1SHN A; 1EW8 A; 3TX0 A; 3UN3 A; 1ELZ A; 2GLQ A; 1KH5 A; 1KHL A; 3UO0 A; 1Y6V A; 3UN5 A; 3OT9 A; 3UN2 A; 1ZEB A; 1N2K A; 2G9Y A; 3MK1 A; 3TWZ A; 3BDF A; 1E1Z P; 3T01 A; 3ED4 A; 1B8J A; 1KH9 A; 2QZU A; 1KHJ A; 1ALJ A; 3M8Y A; 1KH4 A; 3CMR A; 1E3C P; 1O99 A; 3IGY B; 1AUK A; 3IGZ B; 1N2L A; 2GA3 A; 2IFY A; 3SZZ A; 1KHK A; 3M7V A; 1ELY A; 3MK2 A; 1P49 A; 1KHN A; 3BDG A; 4FDI A; 1KH7 A; 3NVL A; 1E2S P; 1URA A; 1EJJ A; 1K7H A; 3DYC A; 1ELX A; 1AJC A; 1AJA A; 2ANH A; 3MK0 A; 1EQJ A; 1SHQ A; 1ED8 A; 1ANJ A; 1AJD A; 1O98 A; 3BDG B; 3SZY A; 1HJK A; 1EI6 A; 1FSU A; 1URB A;
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
