3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Genus: 205
Slipknot S +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 15-463 449 1-14 498-549 464-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 16-467 452 1-15 494-549 468-493 15 56 slipknot
view details
3.1 16-493 478 1-15 497-549 494-496 15 53 slipknot
view details
2.1 12-496 485 1-11 501-549 497-500 11 49 slipknot
view details
2.1 13-496 484 1-11, 500-549 12-12, 497-499 11 50 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 205
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igyB02
1E1ZP 1HQAA 1AJAA 1ED8A 1ALIA 1ANIA 1EW8A 1ZEDA 1ELZA 2ANHA 1ELYA 1KHNA 1B8JA 3TX0A 3CMRA 1ELXA 3M8ZA 1SHNA 1ZEBA 3MK0A 3UN2A 2G9YA 2IFYA 1EW9A 1K7HA 3NVLA 1N2LA 4FDJA 1URAA 3ED4A 1SHQA 1AJDA 1EI6A 1URBA 3OT9A 1KH5A 1ALKA 3M8WA 1FSUA 1KHLA 2GA3A 1AUKA 1O98A 3T01A 3SZZA 3TWZA 1KH9A 1AJCA 3IGYB 1E3CP 1N2KA 1HDHA 1ZEFA 3BDHA 1P49A 1EW2A 1Y7AA 1EJJA 2GLQA 1KHKA 1E33P 3MK2A 3BDFA 1KH4A 3DPCA 3MK1A 3UNYA 3SZYA 3M7VA 3T02A 1EQJA 1KH7A 3M8YA 4FDIA 3UO0A 1ANJA 1KHJA 1Y6VA 3BDGB 2QZUA 3UN5A 1ED9A 1E2SP 3T00A 3IGZB 3UN3A 3DYCA 1HJKA 3BDGA 1ALJA 1AJBA 1O99A
chains in the KnotProt database with same CATH superfamily
1E1ZP 1HQAA 1AJAA 1ED8A 1ALIA 1ANIA 1EW8A 1ZEDA 1ELZA 2ANHA 1ELYA 1KHNA 1B8JA 3TX0A 3CMRA 1ELXA 3M8ZA 1SHNA 1ZEBA 3MK0A 3UN2A 2G9YA 2IFYA 1EW9A 1K7HA 3NVLA 1N2LA 4FDJA 1URAA 3ED4A 1SHQA 1AJDA 1EI6A 1URBA 3OT9A 1KH5A 1ALKA 3M8WA 1FSUA 1KHLA 2GA3A 1AUKA 1O98A 3T01A 3SZZA 3TWZA 1KH9A 1AJCA 3IGYB 1E3CP 1N2KA 1HDHA 1ZEFA 3BDHA 1P49A 1EW2A 1Y7AA 1EJJA 2GLQA 1KHKA 1E33P 3MK2A 3BDFA 1KH4A 3DPCA 3MK1A 3UNYA 3SZYA 3M7VA 3T02A 1EQJA 1KH7A 3M8YA 4FDIA 3UO0A 1ANJA 1KHJA 1Y6VA 3BDGB 2QZUA 3UN5A 1ED9A 1E2SP 3T00A 3IGZB 3UN3A 3DYCA 1HJKA 3BDGA 1ALJA 1AJBA 1O99A
chains in the KnotProt database with same CATH topology
1E1ZP 1HQAA 1AJAA 1ED8A 1ALIA 1ANIA 1EW8A 1ZEDA 1ELZA 2ANHA 1ELYA 1KHNA 1B8JA 3TX0A 3CMRA 1ELXA 3M8ZA 1SHNA 1ZEBA 3MK0A 3UN2A 2G9YA 2IFYA 1EW9A 1K7HA 3NVLA 1N2LA 4FDJA 1URAA 3ED4A 1SHQA 1AJDA 1EI6A 1URBA 3OT9A 1KH5A 1ALKA 3M8WA 1FSUA 1KHLA 2GA3A 1AUKA 1O98A 3T01A 3SZZA 3TWZA 1KH9A 1AJCA 3IGYB 1E3CP 1N2KA 1HDHA 1ZEFA 3BDHA 1P49A 1EW2A 1Y7AA 1EJJA 2GLQA 1KHKA 1E33P 3MK2A 3BDFA 1KH4A 3DPCA 3MK1A 3UNYA 3SZYA 3M7VA 3T02A 1EQJA 1KH7A 3M8YA 4FDIA 3UO0A 1ANJA 1KHJA 1Y6VA 3BDGB 2QZUA 3UN5A 1ED9A 1E2SP 3T00A 3IGZB 3UN3A 3DYCA 1HJKA 3BDGA 1ALJA 1AJBA 1O99A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1E1Z P;  1HQA A;  1AJA A;  1ED8 A;  1ALI A;  1ANI A;  1EW8 A;  1ZED A;  1ELZ A;  2ANH A;  1ELY A;  1KHN A;  1B8J A;  3TX0 A;  3CMR A;  1ELX A;  3M8Z A;  1SHN A;  1ZEB A;  3MK0 A;  3UN2 A;  2G9Y A;  2IFY A;  1EW9 A;  1K7H A;  3NVL A;  1N2L A;  4FDJ A;  1URA A;  3ED4 A;  1SHQ A;  1AJD A;  1EI6 A;  1URB A;  3OT9 A;  1KH5 A;  1ALK A;  3M8W A;  1FSU A;  1KHL A;  2GA3 A;  1AUK A;  1O98 A;  3T01 A;  3SZZ A;  3TWZ A;  1KH9 A;  1AJC A;  3IGY B;  1E3C P;  1N2K A;  1HDH A;  1ZEF A;  3BDH A;  1P49 A;  1EW2 A;  1Y7A A;  1EJJ A;  2GLQ A;  1KHK A;  1E33 P;  3MK2 A;  3BDF A;  1KH4 A;  3DPC A;  3MK1 A;  3UNY A;  3SZY A;  3M7V A;  3T02 A;  1EQJ A;  1KH7 A;  3M8Y A;  4FDI A;  3UO0 A;  1ANJ A;  1KHJ A;  1Y6V A;  3BDG B;  2QZU A;  3UN5 A;  1ED9 A;  1E2S P;  3T00 A;  3IGZ B;  3UN3 A;  3DYC A;  1HJK A;  3BDG A;  1ALJ A;  1AJB A;  1O99 A; 
#chains in the KnotProt database with same CATH topology
 1E1Z P;  1HQA A;  1AJA A;  1ED8 A;  1ALI A;  1ANI A;  1EW8 A;  1ZED A;  1ELZ A;  2ANH A;  1ELY A;  1KHN A;  1B8J A;  3TX0 A;  3CMR A;  1ELX A;  3M8Z A;  1SHN A;  1ZEB A;  3MK0 A;  3UN2 A;  2G9Y A;  2IFY A;  1EW9 A;  1K7H A;  3NVL A;  1N2L A;  4FDJ A;  1URA A;  3ED4 A;  1SHQ A;  1AJD A;  1EI6 A;  1URB A;  3OT9 A;  1KH5 A;  1ALK A;  3M8W A;  1FSU A;  1KHL A;  2GA3 A;  1AUK A;  1O98 A;  3T01 A;  3SZZ A;  3TWZ A;  1KH9 A;  1AJC A;  3IGY B;  1E3C P;  1N2K A;  1HDH A;  1ZEF A;  3BDH A;  1P49 A;  1EW2 A;  1Y7A A;  1EJJ A;  2GLQ A;  1KHK A;  1E33 P;  3MK2 A;  3BDF A;  1KH4 A;  3DPC A;  3MK1 A;  3UNY A;  3SZY A;  3M7V A;  3T02 A;  1EQJ A;  1KH7 A;  3M8Y A;  4FDI A;  3UO0 A;  1ANJ A;  1KHJ A;  1Y6V A;  3BDG B;  2QZU A;  3UN5 A;  1ED9 A;  1E2S P;  3T00 A;  3IGZ B;  3UN3 A;  3DYC A;  1HJK A;  3BDG A;  1ALJ A;  1AJB A;  1O99 A; 
#chains in the KnotProt database with same CATH homology
 1E1Z P;  1HQA A;  1AJA A;  1ED8 A;  1ALI A;  1ANI A;  1EW8 A;  1ZED A;  1ELZ A;  2ANH A;  1ELY A;  1KHN A;  1B8J A;  3TX0 A;  3CMR A;  1ELX A;  3M8Z A;  1SHN A;  1ZEB A;  3MK0 A;  3UN2 A;  2G9Y A;  2IFY A;  1EW9 A;  1K7H A;  3NVL A;  1N2L A;  4FDJ A;  1URA A;  3ED4 A;  1SHQ A;  1AJD A;  1EI6 A;  1URB A;  3OT9 A;  1KH5 A;  1ALK A;  3M8W A;  1FSU A;  1KHL A;  2GA3 A;  1AUK A;  1O98 A;  3T01 A;  3SZZ A;  3TWZ A;  1KH9 A;  1AJC A;  3IGY B;  1E3C P;  1N2K A;  1HDH A;  1ZEF A;  3BDH A;  1P49 A;  1EW2 A;  1Y7A A;  1EJJ A;  2GLQ A;  1KHK A;  1E33 P;  3MK2 A;  3BDF A;  1KH4 A;  3DPC A;  3MK1 A;  3UNY A;  3SZY A;  3M7V A;  3T02 A;  1EQJ A;  1KH7 A;  3M8Y A;  4FDI A;  3UO0 A;  1ANJ A;  1KHJ A;  1Y6V A;  3BDG B;  2QZU A;  3UN5 A;  1ED9 A;  1E2S P;  3T00 A;  3IGZ B;  3UN3 A;  3DYC A;  1HJK A;  3BDG A;  1ALJ A;  1AJB A;  1O99 A;
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling