3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Genus: 205
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-463 449 1-14 498-549 464-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 16-467 452 1-15 494-549 468-493 15 56 slipknot
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3.1 16-493 478 1-15 497-549 494-496 15 53 slipknot
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2.1 12-496 485 1-11 501-549 497-500 11 49 slipknot
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2.1 13-496 484 1-11, 500-549 12-12, 497-499 11 50 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 205
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igyB02
1ANJA 1SHQA 2GLQA 1AUKA 3IGZB 3IGYB 1AJAA 3MK2A 4FDIA 2IFYA 3TWZA 1O99A 1KHJA 1ZEFA 1B8JA 1ZEDA 1FSUA 4FDJA 1HDHA 3UN2A 1ED9A 3BDFA 1ALIA 1ZEBA 3MK0A 3SZZA 1KH5A 3OT9A 1E33P 1P49A 3M8ZA 1O98A 3TX0A 1N2KA 3T00A 3UNYA 3DYCA 1E2SP 1EQJA 3NVLA 1KHNA 1ELZA 1URBA 1E3CP 1E1ZP 3MK1A 1ELXA 1HJKA 3M7VA 3UN5A 1EW9A 1AJDA 1ALKA 2ANHA 3BDGB 3T02A 3BDHA 3UN3A 1HQAA 1EJJA 1EI6A 1N2LA 1EW8A 1KH9A 1KHLA 3ED4A 3UO0A 3M8YA 1ANIA 1KHKA 3CMRA 1Y7AA 1EW2A 3SZYA 2G9YA 1AJBA 1SHNA 3T01A 1KH7A 2GA3A 1URAA 1ED8A 1ELYA 3BDGA 1Y6VA 1KH4A 1K7HA 2QZUA 3DPCA 3M8WA 1AJCA 1ALJA
chains in the KnotProt database with same CATH superfamily
1ANJA 1SHQA 2GLQA 1AUKA 3IGZB 3IGYB 1AJAA 3MK2A 4FDIA 2IFYA 3TWZA 1O99A 1KHJA 1ZEFA 1B8JA 1ZEDA 1FSUA 4FDJA 1HDHA 3UN2A 1ED9A 3BDFA 1ALIA 1ZEBA 3MK0A 3SZZA 1KH5A 3OT9A 1E33P 1P49A 3M8ZA 1O98A 3TX0A 1N2KA 3T00A 3UNYA 3DYCA 1E2SP 1EQJA 3NVLA 1KHNA 1ELZA 1URBA 1E3CP 1E1ZP 3MK1A 1ELXA 1HJKA 3M7VA 3UN5A 1EW9A 1AJDA 1ALKA 2ANHA 3BDGB 3T02A 3BDHA 3UN3A 1HQAA 1EJJA 1EI6A 1N2LA 1EW8A 1KH9A 1KHLA 3ED4A 3UO0A 3M8YA 1ANIA 1KHKA 3CMRA 1Y7AA 1EW2A 3SZYA 2G9YA 1AJBA 1SHNA 3T01A 1KH7A 2GA3A 1URAA 1ED8A 1ELYA 3BDGA 1Y6VA 1KH4A 1K7HA 2QZUA 3DPCA 3M8WA 1AJCA 1ALJA
chains in the KnotProt database with same CATH topology
1ANJA 1SHQA 2GLQA 1AUKA 3IGZB 3IGYB 1AJAA 3MK2A 4FDIA 2IFYA 3TWZA 1O99A 1KHJA 1ZEFA 1B8JA 1ZEDA 1FSUA 4FDJA 1HDHA 3UN2A 1ED9A 3BDFA 1ALIA 1ZEBA 3MK0A 3SZZA 1KH5A 3OT9A 1E33P 1P49A 3M8ZA 1O98A 3TX0A 1N2KA 3T00A 3UNYA 3DYCA 1E2SP 1EQJA 3NVLA 1KHNA 1ELZA 1URBA 1E3CP 1E1ZP 3MK1A 1ELXA 1HJKA 3M7VA 3UN5A 1EW9A 1AJDA 1ALKA 2ANHA 3BDGB 3T02A 3BDHA 3UN3A 1HQAA 1EJJA 1EI6A 1N2LA 1EW8A 1KH9A 1KHLA 3ED4A 3UO0A 3M8YA 1ANIA 1KHKA 3CMRA 1Y7AA 1EW2A 3SZYA 2G9YA 1AJBA 1SHNA 3T01A 1KH7A 2GA3A 1URAA 1ED8A 1ELYA 3BDGA 1Y6VA 1KH4A 1K7HA 2QZUA 3DPCA 3M8WA 1AJCA 1ALJA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1ANJ A;  1SHQ A;  2GLQ A;  1AUK A;  3IGZ B;  3IGY B;  1AJA A;  3MK2 A;  4FDI A;  2IFY A;  3TWZ A;  1O99 A;  1KHJ A;  1ZEF A;  1B8J A;  1ZED A;  1FSU A;  4FDJ A;  1HDH A;  3UN2 A;  1ED9 A;  3BDF A;  1ALI A;  1ZEB A;  3MK0 A;  3SZZ A;  1KH5 A;  3OT9 A;  1E33 P;  1P49 A;  3M8Z A;  1O98 A;  3TX0 A;  1N2K A;  3T00 A;  3UNY A;  3DYC A;  1E2S P;  1EQJ A;  3NVL A;  1KHN A;  1ELZ A;  1URB A;  1E3C P;  1E1Z P;  3MK1 A;  1ELX A;  1HJK A;  3M7V A;  3UN5 A;  1EW9 A;  1AJD A;  1ALK A;  2ANH A;  3BDG B;  3T02 A;  3BDH A;  3UN3 A;  1HQA A;  1EJJ A;  1EI6 A;  1N2L A;  1EW8 A;  1KH9 A;  1KHL A;  3ED4 A;  3UO0 A;  3M8Y A;  1ANI A;  1KHK A;  3CMR A;  1Y7A A;  1EW2 A;  3SZY A;  2G9Y A;  1AJB A;  1SHN A;  3T01 A;  1KH7 A;  2GA3 A;  1URA A;  1ED8 A;  1ELY A;  3BDG A;  1Y6V A;  1KH4 A;  1K7H A;  2QZU A;  3DPC A;  3M8W A;  1AJC A;  1ALJ A; 
#chains in the KnotProt database with same CATH topology
 1ANJ A;  1SHQ A;  2GLQ A;  1AUK A;  3IGZ B;  3IGY B;  1AJA A;  3MK2 A;  4FDI A;  2IFY A;  3TWZ A;  1O99 A;  1KHJ A;  1ZEF A;  1B8J A;  1ZED A;  1FSU A;  4FDJ A;  1HDH A;  3UN2 A;  1ED9 A;  3BDF A;  1ALI A;  1ZEB A;  3MK0 A;  3SZZ A;  1KH5 A;  3OT9 A;  1E33 P;  1P49 A;  3M8Z A;  1O98 A;  3TX0 A;  1N2K A;  3T00 A;  3UNY A;  3DYC A;  1E2S P;  1EQJ A;  3NVL A;  1KHN A;  1ELZ A;  1URB A;  1E3C P;  1E1Z P;  3MK1 A;  1ELX A;  1HJK A;  3M7V A;  3UN5 A;  1EW9 A;  1AJD A;  1ALK A;  2ANH A;  3BDG B;  3T02 A;  3BDH A;  3UN3 A;  1HQA A;  1EJJ A;  1EI6 A;  1N2L A;  1EW8 A;  1KH9 A;  1KHL A;  3ED4 A;  3UO0 A;  3M8Y A;  1ANI A;  1KHK A;  3CMR A;  1Y7A A;  1EW2 A;  3SZY A;  2G9Y A;  1AJB A;  1SHN A;  3T01 A;  1KH7 A;  2GA3 A;  1URA A;  1ED8 A;  1ELY A;  3BDG A;  1Y6V A;  1KH4 A;  1K7H A;  2QZU A;  3DPC A;  3M8W A;  1AJC A;  1ALJ A; 
#chains in the KnotProt database with same CATH homology
 1ANJ A;  1SHQ A;  2GLQ A;  1AUK A;  3IGZ B;  3IGY B;  1AJA A;  3MK2 A;  4FDI A;  2IFY A;  3TWZ A;  1O99 A;  1KHJ A;  1ZEF A;  1B8J A;  1ZED A;  1FSU A;  4FDJ A;  1HDH A;  3UN2 A;  1ED9 A;  3BDF A;  1ALI A;  1ZEB A;  3MK0 A;  3SZZ A;  1KH5 A;  3OT9 A;  1E33 P;  1P49 A;  3M8Z A;  1O98 A;  3TX0 A;  1N2K A;  3T00 A;  3UNY A;  3DYC A;  1E2S P;  1EQJ A;  3NVL A;  1KHN A;  1ELZ A;  1URB A;  1E3C P;  1E1Z P;  3MK1 A;  1ELX A;  1HJK A;  3M7V A;  3UN5 A;  1EW9 A;  1AJD A;  1ALK A;  2ANH A;  3BDG B;  3T02 A;  3BDH A;  3UN3 A;  1HQA A;  1EJJ A;  1EI6 A;  1N2L A;  1EW8 A;  1KH9 A;  1KHL A;  3ED4 A;  3UO0 A;  3M8Y A;  1ANI A;  1KHK A;  3CMR A;  1Y7A A;  1EW2 A;  3SZY A;  2G9Y A;  1AJB A;  1SHN A;  3T01 A;  1KH7 A;  2GA3 A;  1URA A;  1ED8 A;  1ELY A;  3BDG A;  1Y6V A;  1KH4 A;  1K7H A;  2QZU A;  3DPC A;  3M8W A;  1AJC A;  1ALJ A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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