3IGZB

Crystal structures of leishmania mexicana phosphoglycerate mutase at low cobalt concentration
Genus: 207
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-465 451 1-14 498-549 466-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 7-463 457 1-6 468-549 464-467 6 82 slipknot
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3.1 17-468 452 1-16 493-549 469-492 16 57 slipknot
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3.1 5-492 488 1-4 495-549 493-494 4 55 slipknot
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2.1 14-494 481 1-13 500-549 495-499 13 50 slipknot
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3.1 9-492 484 1-4, 495-549 5-8, 493-494 4 55 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 207
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igzB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igzB02
1AJCA 1HQAA 1ED9A 1ZEFA 1URBA 1AJAA 1Y6VA 1EJJA 1N2KA 1P49A 3UN2A 3M8YA 3M8ZA 3UN5A 3M8WA 4FDJA 1B8JA 2GA3A 3DYCA 3MK2A 1ZEDA 1E3CP 3IGYB 3TX0A 1ELXA 2QZUA 1EQJA 3SZYA 3DPCA 1EW9A 2G9YA 1AUKA 3BDGA 1O98A 1E1ZP 3MK1A 3IGZB 1EW8A 1KHKA 1KH9A 1KHNA 3BDGB 1K7HA 3UNYA 1E33P 3TWZA 1KH7A 1KH5A 2ANHA 1AJDA 1N2LA 3ED4A 1E2SP 1ANIA 2IFYA 1HDHA 3T01A 1AJBA 3UO0A 1FSUA 1ZEBA 1KHLA 3BDFA 4FDIA 3M7VA 1ED8A 3T02A 1O99A 1ALJA 1EW2A 3CMRA 2GLQA 1ALKA 3NVLA 1ELYA 1EI6A 3T00A 1HJKA 3MK0A 1ALIA 1ELZA 1URAA 1SHQA 1Y7AA 3SZZA 3BDHA 1ANJA 1SHNA 1KHJA 1KH4A 3OT9A 3UN3A
chains in the KnotProt database with same CATH superfamily
1AJCA 1HQAA 1ED9A 1ZEFA 1URBA 1AJAA 1Y6VA 1EJJA 1N2KA 1P49A 3UN2A 3M8YA 3M8ZA 3UN5A 3M8WA 4FDJA 1B8JA 2GA3A 3DYCA 3MK2A 1ZEDA 1E3CP 3IGYB 3TX0A 1ELXA 2QZUA 1EQJA 3SZYA 3DPCA 1EW9A 2G9YA 1AUKA 3BDGA 1O98A 1E1ZP 3MK1A 3IGZB 1EW8A 1KHKA 1KH9A 1KHNA 3BDGB 1K7HA 3UNYA 1E33P 3TWZA 1KH7A 1KH5A 2ANHA 1AJDA 1N2LA 3ED4A 1E2SP 1ANIA 2IFYA 1HDHA 3T01A 1AJBA 3UO0A 1FSUA 1ZEBA 1KHLA 3BDFA 4FDIA 3M7VA 1ED8A 3T02A 1O99A 1ALJA 1EW2A 3CMRA 2GLQA 1ALKA 3NVLA 1ELYA 1EI6A 3T00A 1HJKA 3MK0A 1ALIA 1ELZA 1URAA 1SHQA 1Y7AA 3SZZA 3BDHA 1ANJA 1SHNA 1KHJA 1KH4A 3OT9A 3UN3A
chains in the KnotProt database with same CATH topology
1AJCA 1HQAA 1ED9A 1ZEFA 1URBA 1AJAA 1Y6VA 1EJJA 1N2KA 1P49A 3UN2A 3M8YA 3M8ZA 3UN5A 3M8WA 4FDJA 1B8JA 2GA3A 3DYCA 3MK2A 1ZEDA 1E3CP 3IGYB 3TX0A 1ELXA 2QZUA 1EQJA 3SZYA 3DPCA 1EW9A 2G9YA 1AUKA 3BDGA 1O98A 1E1ZP 3MK1A 3IGZB 1EW8A 1KHKA 1KH9A 1KHNA 3BDGB 1K7HA 3UNYA 1E33P 3TWZA 1KH7A 1KH5A 2ANHA 1AJDA 1N2LA 3ED4A 1E2SP 1ANIA 2IFYA 1HDHA 3T01A 1AJBA 3UO0A 1FSUA 1ZEBA 1KHLA 3BDFA 4FDIA 3M7VA 1ED8A 3T02A 1O99A 1ALJA 1EW2A 3CMRA 2GLQA 1ALKA 3NVLA 1ELYA 1EI6A 3T00A 1HJKA 3MK0A 1ALIA 1ELZA 1URAA 1SHQA 1Y7AA 3SZZA 3BDHA 1ANJA 1SHNA 1KHJA 1KH4A 3OT9A 3UN3A
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1AJC A;  1HQA A;  1ED9 A;  1ZEF A;  1URB A;  1AJA A;  1Y6V A;  1EJJ A;  1N2K A;  1P49 A;  3UN2 A;  3M8Y A;  3M8Z A;  3UN5 A;  3M8W A;  4FDJ A;  1B8J A;  2GA3 A;  3DYC A;  3MK2 A;  1ZED A;  1E3C P;  3IGY B;  3TX0 A;  1ELX A;  2QZU A;  1EQJ A;  3SZY A;  3DPC A;  1EW9 A;  2G9Y A;  1AUK A;  3BDG A;  1O98 A;  1E1Z P;  3MK1 A;  3IGZ B;  1EW8 A;  1KHK A;  1KH9 A;  1KHN A;  3BDG B;  1K7H A;  3UNY A;  1E33 P;  3TWZ A;  1KH7 A;  1KH5 A;  2ANH A;  1AJD A;  1N2L A;  3ED4 A;  1E2S P;  1ANI A;  2IFY A;  1HDH A;  3T01 A;  1AJB A;  3UO0 A;  1FSU A;  1ZEB A;  1KHL A;  3BDF A;  4FDI A;  3M7V A;  1ED8 A;  3T02 A;  1O99 A;  1ALJ A;  1EW2 A;  3CMR A;  2GLQ A;  1ALK A;  3NVL A;  1ELY A;  1EI6 A;  3T00 A;  1HJK A;  3MK0 A;  1ALI A;  1ELZ A;  1URA A;  1SHQ A;  1Y7A A;  3SZZ A;  3BDH A;  1ANJ A;  1SHN A;  1KHJ A;  1KH4 A;  3OT9 A;  3UN3 A; 
#chains in the KnotProt database with same CATH topology
 1AJC A;  1HQA A;  1ED9 A;  1ZEF A;  1URB A;  1AJA A;  1Y6V A;  1EJJ A;  1N2K A;  1P49 A;  3UN2 A;  3M8Y A;  3M8Z A;  3UN5 A;  3M8W A;  4FDJ A;  1B8J A;  2GA3 A;  3DYC A;  3MK2 A;  1ZED A;  1E3C P;  3IGY B;  3TX0 A;  1ELX A;  2QZU A;  1EQJ A;  3SZY A;  3DPC A;  1EW9 A;  2G9Y A;  1AUK A;  3BDG A;  1O98 A;  1E1Z P;  3MK1 A;  3IGZ B;  1EW8 A;  1KHK A;  1KH9 A;  1KHN A;  3BDG B;  1K7H A;  3UNY A;  1E33 P;  3TWZ A;  1KH7 A;  1KH5 A;  2ANH A;  1AJD A;  1N2L A;  3ED4 A;  1E2S P;  1ANI A;  2IFY A;  1HDH A;  3T01 A;  1AJB A;  3UO0 A;  1FSU A;  1ZEB A;  1KHL A;  3BDF A;  4FDI A;  3M7V A;  1ED8 A;  3T02 A;  1O99 A;  1ALJ A;  1EW2 A;  3CMR A;  2GLQ A;  1ALK A;  3NVL A;  1ELY A;  1EI6 A;  3T00 A;  1HJK A;  3MK0 A;  1ALI A;  1ELZ A;  1URA A;  1SHQ A;  1Y7A A;  3SZZ A;  3BDH A;  1ANJ A;  1SHN A;  1KHJ A;  1KH4 A;  3OT9 A;  3UN3 A; 
#chains in the KnotProt database with same CATH homology
 1AJC A;  1HQA A;  1ED9 A;  1ZEF A;  1URB A;  1AJA A;  1Y6V A;  1EJJ A;  1N2K A;  1P49 A;  3UN2 A;  3M8Y A;  3M8Z A;  3UN5 A;  3M8W A;  4FDJ A;  1B8J A;  2GA3 A;  3DYC A;  3MK2 A;  1ZED A;  1E3C P;  3IGY B;  3TX0 A;  1ELX A;  2QZU A;  1EQJ A;  3SZY A;  3DPC A;  1EW9 A;  2G9Y A;  1AUK A;  3BDG A;  1O98 A;  1E1Z P;  3MK1 A;  3IGZ B;  1EW8 A;  1KHK A;  1KH9 A;  1KHN A;  3BDG B;  1K7H A;  3UNY A;  1E33 P;  3TWZ A;  1KH7 A;  1KH5 A;  2ANH A;  1AJD A;  1N2L A;  3ED4 A;  1E2S P;  1ANI A;  2IFY A;  1HDH A;  3T01 A;  1AJB A;  3UO0 A;  1FSU A;  1ZEB A;  1KHL A;  3BDF A;  4FDI A;  3M7V A;  1ED8 A;  3T02 A;  1O99 A;  1ALJ A;  1EW2 A;  3CMR A;  2GLQ A;  1ALK A;  3NVL A;  1ELY A;  1EI6 A;  3T00 A;  1HJK A;  3MK0 A;  1ALI A;  1ELZ A;  1URA A;  1SHQ A;  1Y7A A;  3SZZ A;  3BDH A;  1ANJ A;  1SHN A;  1KHJ A;  1KH4 A;  3OT9 A;  3UN3 A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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