3IGZB

Crystal structures of leishmania mexicana phosphoglycerate mutase at low cobalt concentration
Genus: 207
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 15-465 451 1-14 498-549 466-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 7-463 457 1-6 468-549 464-467 6 82 slipknot
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3.1 17-468 452 1-16 493-549 469-492 16 57 slipknot
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3.1 5-492 488 1-4 495-549 493-494 4 55 slipknot
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2.1 14-494 481 1-13 500-549 495-499 13 50 slipknot
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3.1 9-492 484 1-4, 495-549 5-8, 493-494 4 55 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 207
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igzB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igzB02
3BDHA 3M8ZA 1ALIA 3M8WA 1ANIA 1AJBA 4FDJA 3DPCA 1ALKA 1EW2A 1ZEDA 1HQAA 1EW9A 1E33P 3UNYA 1HDHA 3T02A 1Y7AA 3T00A 1ZEFA 1ED9A 1SHNA 1EW8A 3TX0A 3UN3A 1ELZA 2GLQA 1KH5A 1KHLA 3UO0A 1Y6VA 3UN5A 3OT9A 3UN2A 1ZEBA 1N2KA 2G9YA 3MK1A 3TWZA 3BDFA 1E1ZP 3T01A 3ED4A 1B8JA 2QZUA 1KH9A 1KHJA 1ALJA 3M8YA 1KH4A 3CMRA 1E3CP 1O99A 3IGYB 1AUKA 3IGZB 1N2LA 2GA3A 2IFYA 3SZZA 1KHKA 3M7VA 1ELYA 3MK2A 1P49A 1KHNA 3BDGA 4FDIA 1KH7A 3NVLA 1E2SP 1URAA 1EJJA 1K7HA 3DYCA 1ELXA 1AJCA 1AJAA 2ANHA 3MK0A 1EQJA 1SHQA 1ED8A 1ANJA 1AJDA 1O98A 3BDGB 3SZYA 1HJKA 1EI6A 1FSUA 1URBA
chains in the KnotProt database with same CATH superfamily
3BDHA 3M8ZA 1ALIA 3M8WA 1ANIA 1AJBA 4FDJA 3DPCA 1ALKA 1EW2A 1ZEDA 1HQAA 1EW9A 1E33P 3UNYA 1HDHA 3T02A 1Y7AA 3T00A 1ZEFA 1ED9A 1SHNA 1EW8A 3TX0A 3UN3A 1ELZA 2GLQA 1KH5A 1KHLA 3UO0A 1Y6VA 3UN5A 3OT9A 3UN2A 1ZEBA 1N2KA 2G9YA 3MK1A 3TWZA 3BDFA 1E1ZP 3T01A 3ED4A 1B8JA 2QZUA 1KH9A 1KHJA 1ALJA 3M8YA 1KH4A 3CMRA 1E3CP 1O99A 3IGYB 1AUKA 3IGZB 1N2LA 2GA3A 2IFYA 3SZZA 1KHKA 3M7VA 1ELYA 3MK2A 1P49A 1KHNA 3BDGA 4FDIA 1KH7A 3NVLA 1E2SP 1URAA 1EJJA 1K7HA 3DYCA 1ELXA 1AJCA 1AJAA 2ANHA 3MK0A 1EQJA 1SHQA 1ED8A 1ANJA 1AJDA 1O98A 3BDGB 3SZYA 1HJKA 1EI6A 1FSUA 1URBA
chains in the KnotProt database with same CATH topology
3BDHA 3M8ZA 1ALIA 3M8WA 1ANIA 1AJBA 4FDJA 3DPCA 1ALKA 1EW2A 1ZEDA 1HQAA 1EW9A 1E33P 3UNYA 1HDHA 3T02A 1Y7AA 3T00A 1ZEFA 1ED9A 1SHNA 1EW8A 3TX0A 3UN3A 1ELZA 2GLQA 1KH5A 1KHLA 3UO0A 1Y6VA 3UN5A 3OT9A 3UN2A 1ZEBA 1N2KA 2G9YA 3MK1A 3TWZA 3BDFA 1E1ZP 3T01A 3ED4A 1B8JA 2QZUA 1KH9A 1KHJA 1ALJA 3M8YA 1KH4A 3CMRA 1E3CP 1O99A 3IGYB 1AUKA 3IGZB 1N2LA 2GA3A 2IFYA 3SZZA 1KHKA 3M7VA 1ELYA 3MK2A 1P49A 1KHNA 3BDGA 4FDIA 1KH7A 3NVLA 1E2SP 1URAA 1EJJA 1K7HA 3DYCA 1ELXA 1AJCA 1AJAA 2ANHA 3MK0A 1EQJA 1SHQA 1ED8A 1ANJA 1AJDA 1O98A 3BDGB 3SZYA 1HJKA 1EI6A 1FSUA 1URBA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 3BDH A;  3M8Z A;  1ALI A;  3M8W A;  1ANI A;  1AJB A;  4FDJ A;  3DPC A;  1ALK A;  1EW2 A;  1ZED A;  1HQA A;  1EW9 A;  1E33 P;  3UNY A;  1HDH A;  3T02 A;  1Y7A A;  3T00 A;  1ZEF A;  1ED9 A;  1SHN A;  1EW8 A;  3TX0 A;  3UN3 A;  1ELZ A;  2GLQ A;  1KH5 A;  1KHL A;  3UO0 A;  1Y6V A;  3UN5 A;  3OT9 A;  3UN2 A;  1ZEB A;  1N2K A;  2G9Y A;  3MK1 A;  3TWZ A;  3BDF A;  1E1Z P;  3T01 A;  3ED4 A;  1B8J A;  2QZU A;  1KH9 A;  1KHJ A;  1ALJ A;  3M8Y A;  1KH4 A;  3CMR A;  1E3C P;  1O99 A;  3IGY B;  1AUK A;  3IGZ B;  1N2L A;  2GA3 A;  2IFY A;  3SZZ A;  1KHK A;  3M7V A;  1ELY A;  3MK2 A;  1P49 A;  1KHN A;  3BDG A;  4FDI A;  1KH7 A;  3NVL A;  1E2S P;  1URA A;  1EJJ A;  1K7H A;  3DYC A;  1ELX A;  1AJC A;  1AJA A;  2ANH A;  3MK0 A;  1EQJ A;  1SHQ A;  1ED8 A;  1ANJ A;  1AJD A;  1O98 A;  3BDG B;  3SZY A;  1HJK A;  1EI6 A;  1FSU A;  1URB A; 
#chains in the KnotProt database with same CATH topology
 3BDH A;  3M8Z A;  1ALI A;  3M8W A;  1ANI A;  1AJB A;  4FDJ A;  3DPC A;  1ALK A;  1EW2 A;  1ZED A;  1HQA A;  1EW9 A;  1E33 P;  3UNY A;  1HDH A;  3T02 A;  1Y7A A;  3T00 A;  1ZEF A;  1ED9 A;  1SHN A;  1EW8 A;  3TX0 A;  3UN3 A;  1ELZ A;  2GLQ A;  1KH5 A;  1KHL A;  3UO0 A;  1Y6V A;  3UN5 A;  3OT9 A;  3UN2 A;  1ZEB A;  1N2K A;  2G9Y A;  3MK1 A;  3TWZ A;  3BDF A;  1E1Z P;  3T01 A;  3ED4 A;  1B8J A;  2QZU A;  1KH9 A;  1KHJ A;  1ALJ A;  3M8Y A;  1KH4 A;  3CMR A;  1E3C P;  1O99 A;  3IGY B;  1AUK A;  3IGZ B;  1N2L A;  2GA3 A;  2IFY A;  3SZZ A;  1KHK A;  3M7V A;  1ELY A;  3MK2 A;  1P49 A;  1KHN A;  3BDG A;  4FDI A;  1KH7 A;  3NVL A;  1E2S P;  1URA A;  1EJJ A;  1K7H A;  3DYC A;  1ELX A;  1AJC A;  1AJA A;  2ANH A;  3MK0 A;  1EQJ A;  1SHQ A;  1ED8 A;  1ANJ A;  1AJD A;  1O98 A;  3BDG B;  3SZY A;  1HJK A;  1EI6 A;  1FSU A;  1URB A; 
#chains in the KnotProt database with same CATH homology
 3BDH A;  3M8Z A;  1ALI A;  3M8W A;  1ANI A;  1AJB A;  4FDJ A;  3DPC A;  1ALK A;  1EW2 A;  1ZED A;  1HQA A;  1EW9 A;  1E33 P;  3UNY A;  1HDH A;  3T02 A;  1Y7A A;  3T00 A;  1ZEF A;  1ED9 A;  1SHN A;  1EW8 A;  3TX0 A;  3UN3 A;  1ELZ A;  2GLQ A;  1KH5 A;  1KHL A;  3UO0 A;  1Y6V A;  3UN5 A;  3OT9 A;  3UN2 A;  1ZEB A;  1N2K A;  2G9Y A;  3MK1 A;  3TWZ A;  3BDF A;  1E1Z P;  3T01 A;  3ED4 A;  1B8J A;  2QZU A;  1KH9 A;  1KHJ A;  1ALJ A;  3M8Y A;  1KH4 A;  3CMR A;  1E3C P;  1O99 A;  3IGY B;  1AUK A;  3IGZ B;  1N2L A;  2GA3 A;  2IFY A;  3SZZ A;  1KHK A;  3M7V A;  1ELY A;  3MK2 A;  1P49 A;  1KHN A;  3BDG A;  4FDI A;  1KH7 A;  3NVL A;  1E2S P;  1URA A;  1EJJ A;  1K7H A;  3DYC A;  1ELX A;  1AJC A;  1AJA A;  2ANH A;  3MK0 A;  1EQJ A;  1SHQ A;  1ED8 A;  1ANJ A;  1AJD A;  1O98 A;  3BDG B;  3SZY A;  1HJK A;  1EI6 A;  1FSU A;  1URB A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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