3T02 | KnotProt

Genus: 126

Slipknot S +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	25-247	223	1-24	384-413	248-383	24	30	slipknot

Chain Sequence

MSKISVTVNGRRYPWPRVPAIAVCLDGCEPAYLDAAIDAGLMPALKRIKERGAVRLAHSVIPSFANPNNLSIATGSPPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKDKLRALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAGVKLLREFRPDIMYLTTTDYVQHKYAPGVPEANSFYEMFDRYLAELDGLGAAIVVTADHGMKPKHKADGSPDVIYVQDLLDEWLGKDAARVILPITDPYVVHHGALGSFATAYLPDGCDRSEIMARLKAIQGVDVVLGREEACRRFELPEDRIGDIVLVSSENKTLGTSEHRHDLAALDEPLRSHGGLTEQEVPFIVNRVLPELPNAPRLRNFDAFFYAVTAAA

Whole chain analysis

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Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	3.1	25-249	225	1-24	382-413	250-381	24	32	slipknot
view details	2.1	8-381	374	1-7	385-413	382-384	7	29	slipknot
view details	2.1	21-244	224		1-5, 250-413	6-20, 245-249	5	164	slipknot
view details	2.1	27-325	299		1-24, 336-413	25-26, 326-335	24	78	slipknot
view details	2.1	27-336	310		1-24, 342-413	25-26, 337-341	24	72	slipknot

sequence length	413
structure length	413
publication title	Structural and mechanistic insights into C-p bond hydrolysis by phosphonoacetate hydrolase. pubmed doi rcsb
molecule tags	Hydrolase
molecule keywords	phosphonoacetate hydrolase
source organism	Sinorhizobium meliloti
total genus	Genus: 126
ec nomenclature	ec 3.6.1.9: Nucleotide diphosphatase.
pdb deposition date	2011-07-19
KnotProt deposition date	2014-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01663	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1360.110	Alpha Beta	2-Layer Sandwich	Gyrase A; domain 2	Domain 2, Phosphonoacetate Hydrolase	3t02A02
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	3t02A01

3BDGA 1EJJA 1EW2A 2G9YA 1O98A 1ED8A 1ANJA 1ELXA 3MK0A 1FSUA 3T00A 1E33P 1SHQA 3UN2A 1HDHA 1Y7AA 1KHKA 3DPCA 3UN5A 2IFYA 3ED4A 3UO0A 1E3CP 3IGZB 1HJKA 3TWZA 1AJDA 1AJBA 3T02A 1E1ZP 1EW8A 3MK1A 1KH4A 1EI6A 3NVLA 2ANHA 4FDIA 3SZYA 4FDJA 3CMRA 3DYCA 2QZUA 1KHNA 1ALJA 1ELZA 3M8ZA 1Y6VA 1AJCA 1ALIA 3IGYB 3SZZA 2GA3A 1KHLA 1P49A 1URAA 1AJAA 1KH7A 1E2SP 3BDHA 3TX0A 1K7HA 1URBA 1N2KA 1KH5A 1EQJA 1ZEDA 1ZEBA 1ANIA 3M8WA 1EW9A 1ELYA 1HQAA 3OT9A 1B8JA 3T01A 3M8YA 1KH9A 1SHNA 3BDFA 1ZEFA 3UN3A 1ED9A 1ALKA 3UNYA 1N2LA 1O99A 1AUKA 3M7VA 3BDGB 3MK2A 1KHJA 2GLQA
chains in the KnotProt database with same CATH superfamily

#chains in the KnotProt database with same CATH superfamily
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  2IFY A;  3ED4 A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  3T02 A;  1E1Z P;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  2ANH A;  4FDI A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1KHL A;  1P49 A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  1HQA A;  3OT9 A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A; 
#chains in the KnotProt database with same CATH topology
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  2IFY A;  3ED4 A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  3T02 A;  1E1Z P;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  2ANH A;  4FDI A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1KHL A;  1P49 A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  1HQA A;  3OT9 A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A; 
#chains in the KnotProt database with same CATH homology
 3BDG A;  1EJJ A;  1EW2 A;  2G9Y A;  1O98 A;  1ED8 A;  1ANJ A;  1ELX A;  3MK0 A;  1FSU A;  3T00 A;  1E33 P;  1SHQ A;  3UN2 A;  1HDH A;  1Y7A A;  1KHK A;  3DPC A;  3UN5 A;  2IFY A;  3ED4 A;  3UO0 A;  1E3C P;  3IGZ B;  1HJK A;  3TWZ A;  1AJD A;  1AJB A;  3T02 A;  1E1Z P;  1EW8 A;  3MK1 A;  1KH4 A;  1EI6 A;  3NVL A;  2ANH A;  4FDI A;  3SZY A;  4FDJ A;  3CMR A;  3DYC A;  2QZU A;  1KHN A;  1ALJ A;  1ELZ A;  3M8Z A;  1Y6V A;  1AJC A;  1ALI A;  3IGY B;  3SZZ A;  2GA3 A;  1KHL A;  1P49 A;  1URA A;  1AJA A;  1KH7 A;  1E2S P;  3BDH A;  3TX0 A;  1K7H A;  1URB A;  1N2K A;  1KH5 A;  1EQJ A;  1ZED A;  1ZEB A;  1ANI A;  3M8W A;  1EW9 A;  1ELY A;  1HQA A;  3OT9 A;  1B8J A;  3T01 A;  3M8Y A;  1KH9 A;  1SHN A;  3BDF A;  1ZEF A;  3UN3 A;  1ED9 A;  1ALK A;  3UNY A;  1N2L A;  1O99 A;  1AUK A;  3M7V A;  3BDG B;  3MK2 A;  1KHJ A;  2GLQ A;

1EI6A 3SZYA 3SZZA 3T00A 3T01A
similar chains in the KnotProt database (40% sequence similarity)

None
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1EI6 A; 3SZY A; 3SZZ A; 3T00 A; 3T01 A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)

3T02A

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁