3BDGB

Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 159
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 43-365 323 1-42 416-446 366-415 42 31 slipknot
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASI-----AANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGHTGSQ--------LRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 45-361 317 1-44 400-433 362-399 44 34 slipknot
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3.1 42-399 358 1-41 403-433 400-402 41 31 slipknot
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2.1 41-402 362 1-40 405-433 403-404 40 29 slipknot
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2.1 31-359 329 1-17, 362-433 18-30, 360-361 17 72 slipknot
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2.1 36-359 324 1-30, 362-433 31-35, 360-361 30 72 slipknot
sequence length 446
structure length 433
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
molecule tags Hydrolase
molecule keywords Alkaline phosphatase
source organism Escherichia coli
missing residues 324-328, 401-408
total genus Genus: 159
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14
KnotProt deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00245 Alk_phosphatase Alkaline phosphatase
B PF00245.15 Alk_phosphatase Alkaline phosphatase
B PF00245.15 Alk_phosphatase Alkaline phosphatase
B PF01663.17 Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
B PF01676.13 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdgB00
1P49A 1KH4A 1SHQA 3OT9A 3T01A 3DPCA 2IFYA 3T02A 1EW8A 1AJAA 1ALJA 1FSUA 1O99A 1ZEDA 3IGZB 2QZUA 2G9YA 1KHKA 1ELXA 4FDIA 1AJCA 1ED9A 1KH5A 3ED4A 1AUKA 1AJDA 1HJKA 3BDGB 1EW2A 1EQJA 1AJBA 1O98A 1URAA 1KH9A 3TX0A 1ALKA 1KHJA 2GA3A 3NVLA 3T00A 3M7VA 1KHLA 3TWZA 1ZEBA 1EI6A 4FDJA 3SZYA 1EJJA 3DYCA 3UN3A 1KH7A 3MK1A 3M8YA 1Y7AA 1ANJA 3MK2A 1ELZA 2GLQA 1N2LA 1KHNA 1SHNA 1N2KA 1E2SP 3BDGA 1K7HA 2ANHA 1HQAA 3M8WA 3UO0A 1ELYA 3BDFA 1ZEFA 1EW9A 3MK0A 1Y6VA 3UN2A 1E3CP 3M8ZA 3SZZA 3UN5A 1B8JA 3IGYB 1ED8A 1E1ZP 1ALIA 1E33P 1URBA 1HDHA 1ANIA 3BDHA 3CMRA 3UNYA
chains in the KnotProt database with same CATH superfamily
1P49A 1KH4A 1SHQA 3OT9A 3T01A 3DPCA 2IFYA 3T02A 1EW8A 1AJAA 1ALJA 1FSUA 1O99A 1ZEDA 3IGZB 2QZUA 2G9YA 1KHKA 1ELXA 4FDIA 1AJCA 1ED9A 1KH5A 3ED4A 1AUKA 1AJDA 1HJKA 3BDGB 1EW2A 1EQJA 1AJBA 1O98A 1URAA 1KH9A 3TX0A 1ALKA 1KHJA 2GA3A 3NVLA 3T00A 3M7VA 1KHLA 3TWZA 1ZEBA 1EI6A 4FDJA 3SZYA 1EJJA 3DYCA 3UN3A 1KH7A 3MK1A 3M8YA 1Y7AA 1ANJA 3MK2A 1ELZA 2GLQA 1N2LA 1KHNA 1SHNA 1N2KA 1E2SP 3BDGA 1K7HA 2ANHA 1HQAA 3M8WA 3UO0A 1ELYA 3BDFA 1ZEFA 1EW9A 3MK0A 1Y6VA 3UN2A 1E3CP 3M8ZA 3SZZA 3UN5A 1B8JA 3IGYB 1ED8A 1E1ZP 1ALIA 1E33P 1URBA 1HDHA 1ANIA 3BDHA 3CMRA 3UNYA
chains in the KnotProt database with same CATH topology
1P49A 1KH4A 1SHQA 3OT9A 3T01A 3DPCA 2IFYA 3T02A 1EW8A 1AJAA 1ALJA 1FSUA 1O99A 1ZEDA 3IGZB 2QZUA 2G9YA 1KHKA 1ELXA 4FDIA 1AJCA 1ED9A 1KH5A 3ED4A 1AUKA 1AJDA 1HJKA 3BDGB 1EW2A 1EQJA 1AJBA 1O98A 1URAA 1KH9A 3TX0A 1ALKA 1KHJA 2GA3A 3NVLA 3T00A 3M7VA 1KHLA 3TWZA 1ZEBA 1EI6A 4FDJA 3SZYA 1EJJA 3DYCA 3UN3A 1KH7A 3MK1A 3M8YA 1Y7AA 1ANJA 3MK2A 1ELZA 2GLQA 1N2LA 1KHNA 1SHNA 1N2KA 1E2SP 3BDGA 1K7HA 2ANHA 1HQAA 3M8WA 3UO0A 1ELYA 3BDFA 1ZEFA 1EW9A 3MK0A 1Y6VA 3UN2A 1E3CP 3M8ZA 3SZZA 3UN5A 1B8JA 3IGYB 1ED8A 1E1ZP 1ALIA 1E33P 1URBA 1HDHA 1ANIA 3BDHA 3CMRA 3UNYA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 1P49 A;  1KH4 A;  1SHQ A;  3OT9 A;  3T01 A;  3DPC A;  2IFY A;  3T02 A;  1EW8 A;  1AJA A;  1ALJ A;  1FSU A;  1O99 A;  1ZED A;  3IGZ B;  2QZU A;  2G9Y A;  1KHK A;  1ELX A;  4FDI A;  1AJC A;  1ED9 A;  1KH5 A;  3ED4 A;  1AUK A;  1AJD A;  1HJK A;  3BDG B;  1EW2 A;  1EQJ A;  1AJB A;  1O98 A;  1URA A;  1KH9 A;  3TX0 A;  1ALK A;  1KHJ A;  2GA3 A;  3NVL A;  3T00 A;  3M7V A;  1KHL A;  3TWZ A;  1ZEB A;  1EI6 A;  4FDJ A;  3SZY A;  1EJJ A;  3DYC A;  3UN3 A;  1KH7 A;  3MK1 A;  3M8Y A;  1Y7A A;  1ANJ A;  3MK2 A;  1ELZ A;  2GLQ A;  1N2L A;  1KHN A;  1SHN A;  1N2K A;  1E2S P;  3BDG A;  1K7H A;  2ANH A;  1HQA A;  3M8W A;  3UO0 A;  1ELY A;  3BDF A;  1ZEF A;  1EW9 A;  3MK0 A;  1Y6V A;  3UN2 A;  1E3C P;  3M8Z A;  3SZZ A;  3UN5 A;  1B8J A;  3IGY B;  1ED8 A;  1E1Z P;  1ALI A;  1E33 P;  1URB A;  1HDH A;  1ANI A;  3BDH A;  3CMR A;  3UNY A; 
#chains in the KnotProt database with same CATH topology
 1P49 A;  1KH4 A;  1SHQ A;  3OT9 A;  3T01 A;  3DPC A;  2IFY A;  3T02 A;  1EW8 A;  1AJA A;  1ALJ A;  1FSU A;  1O99 A;  1ZED A;  3IGZ B;  2QZU A;  2G9Y A;  1KHK A;  1ELX A;  4FDI A;  1AJC A;  1ED9 A;  1KH5 A;  3ED4 A;  1AUK A;  1AJD A;  1HJK A;  3BDG B;  1EW2 A;  1EQJ A;  1AJB A;  1O98 A;  1URA A;  1KH9 A;  3TX0 A;  1ALK A;  1KHJ A;  2GA3 A;  3NVL A;  3T00 A;  3M7V A;  1KHL A;  3TWZ A;  1ZEB A;  1EI6 A;  4FDJ A;  3SZY A;  1EJJ A;  3DYC A;  3UN3 A;  1KH7 A;  3MK1 A;  3M8Y A;  1Y7A A;  1ANJ A;  3MK2 A;  1ELZ A;  2GLQ A;  1N2L A;  1KHN A;  1SHN A;  1N2K A;  1E2S P;  3BDG A;  1K7H A;  2ANH A;  1HQA A;  3M8W A;  3UO0 A;  1ELY A;  3BDF A;  1ZEF A;  1EW9 A;  3MK0 A;  1Y6V A;  3UN2 A;  1E3C P;  3M8Z A;  3SZZ A;  3UN5 A;  1B8J A;  3IGY B;  1ED8 A;  1E1Z P;  1ALI A;  1E33 P;  1URB A;  1HDH A;  1ANI A;  3BDH A;  3CMR A;  3UNY A; 
#chains in the KnotProt database with same CATH homology
 1P49 A;  1KH4 A;  1SHQ A;  3OT9 A;  3T01 A;  3DPC A;  2IFY A;  3T02 A;  1EW8 A;  1AJA A;  1ALJ A;  1FSU A;  1O99 A;  1ZED A;  3IGZ B;  2QZU A;  2G9Y A;  1KHK A;  1ELX A;  4FDI A;  1AJC A;  1ED9 A;  1KH5 A;  3ED4 A;  1AUK A;  1AJD A;  1HJK A;  3BDG B;  1EW2 A;  1EQJ A;  1AJB A;  1O98 A;  1URA A;  1KH9 A;  3TX0 A;  1ALK A;  1KHJ A;  2GA3 A;  3NVL A;  3T00 A;  3M7V A;  1KHL A;  3TWZ A;  1ZEB A;  1EI6 A;  4FDJ A;  3SZY A;  1EJJ A;  3DYC A;  3UN3 A;  1KH7 A;  3MK1 A;  3M8Y A;  1Y7A A;  1ANJ A;  3MK2 A;  1ELZ A;  2GLQ A;  1N2L A;  1KHN A;  1SHN A;  1N2K A;  1E2S P;  3BDG A;  1K7H A;  2ANH A;  1HQA A;  3M8W A;  3UO0 A;  1ELY A;  3BDF A;  1ZEF A;  1EW9 A;  3MK0 A;  1Y6V A;  3UN2 A;  1E3C P;  3M8Z A;  3SZZ A;  3UN5 A;  1B8J A;  3IGY B;  1ED8 A;  1E1Z P;  1ALI A;  1E33 P;  1URB A;  1HDH A;  1ANI A;  3BDH A;  3CMR A;  3UNY A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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