3IGYB

Crystal structures of leishmania mexicana phosphoglycerate mutase at high cobalt concentrations
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 15-463 449 1-14 498-549 464-497 14 52 slipknot
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 16-467 452 1-15 494-549 468-493 15 56 slipknot
view details
3.1 16-493 478 1-15 497-549 494-496 15 53 slipknot
view details
2.1 12-496 485 1-11 501-549 497-500 11 49 slipknot
view details
2.1 13-496 484 1-11, 500-549 12-12, 497-499 11 50 slipknot
sequence length 549
structure length 549
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
source organism Leishmania mexicana
total genus Genus: 205
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igyB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 3igyB02
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH superfamily
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH topology
1KH7A 2GLQA 3DYCA 3IGYB 3T01A 1KHNA 3T00A 1SHQA 3M8WA 1AJDA 1AJBA 1KH4A 1Y7AA 1AUKA 1ALKA 3M7VA 1B8JA 1ZEBA 3BDGB 3T02A 1EW8A 1Y6VA 3UN2A 1ELYA 1E3CP 3UN5A 1URBA 3TWZA 1E1ZP 1O98A 1HJKA 1ALIA 1E2SP 1EQJA 2G9YA 1KHJA 1O99A 3IGZB 3MK2A 1KHLA 1N2KA 1P49A 1ANIA 3SZYA 3M8YA 2QZUA 1ELZA 1EJJA 3OT9A 3UO0A 1K7HA 2GA3A 1N2LA 3UNYA 1AJCA 1ZEFA 2IFYA 3MK0A 1KH9A 3BDGA 1HDHA 1EW2A 3DPCA 1ALJA 1ED8A 1EI6A 2ANHA 3UN3A 3BDFA 3ED4A 1E33P 1EW9A 1KHKA 3SZZA 3NVLA 1ZEDA 1AJAA 1KH5A 1FSUA 3CMRA 3MK1A 3TX0A 1URAA 1ELXA 3M8ZA 1ANJA 1HQAA 1ED9A 4FDJA 3BDHA 4FDIA 1SHNA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
#chains in the KnotProt database with same CATH topology
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
#chains in the KnotProt database with same CATH homology
 1KH7 A;  2GLQ A;  3DYC A;  3IGY B;  3T01 A;  1KHN A;  3T00 A;  1SHQ A;  3M8W A;  1AJD A;  1AJB A;  1KH4 A;  1Y7A A;  1AUK A;  1ALK A;  3M7V A;  1B8J A;  1ZEB A;  3BDG B;  3T02 A;  1EW8 A;  1Y6V A;  3UN2 A;  1ELY A;  1E3C P;  3UN5 A;  1URB A;  3TWZ A;  1E1Z P;  1O98 A;  1HJK A;  1ALI A;  1E2S P;  1EQJ A;  2G9Y A;  1KHJ A;  1O99 A;  3IGZ B;  3MK2 A;  1KHL A;  1N2K A;  1P49 A;  1ANI A;  3SZY A;  3M8Y A;  2QZU A;  1ELZ A;  1EJJ A;  3OT9 A;  3UO0 A;  1K7H A;  2GA3 A;  1N2L A;  3UNY A;  1AJC A;  1ZEF A;  2IFY A;  3MK0 A;  1KH9 A;  3BDG A;  1HDH A;  1EW2 A;  3DPC A;  1ALJ A;  1ED8 A;  1EI6 A;  2ANH A;  3UN3 A;  3BDF A;  3ED4 A;  1E33 P;  1EW9 A;  1KHK A;  3SZZ A;  3NVL A;  1ZED A;  1AJA A;  1KH5 A;  1FSU A;  3CMR A;  3MK1 A;  3TX0 A;  1URA A;  1ELX A;  3M8Z A;  1ANJ A;  1HQA A;  1ED9 A;  4FDJ A;  3BDH A;  4FDI A;  1SHN A; 
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling
Application loaded.