4FDIA

The molecular basis of mucopolysaccharidosis iv a
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 6-261 256 1-5 293-494 262-292 5 202 slipknot
Chain Sequence
QPPNILLLLMDDMGWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAALLTGRLPIRNGFYTTNAHARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLGHRPQFHPLKHGFDEWFGSPNCHFGPYDNKARPNIPVYRDWEMVGRYYEEFPINLKTGEANLTQIYLQEALDFIKRQARHHPFFLYWAVDATHAPVYASKPFLGTSQRGRYGDAVREIDDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQGGSNGPFLCGKQTTFEGGMREPALAWWPGHVTAGQVSHQLGSIMDLFTTSLALAGLTPPSDRAIDGLNLLPTLLQGRLMDRPIFYYRGDTLMAATLGQHKAHFWTWTNSWENFRQGIDFCPGQNVSGVTTHNLEDHTKLPLIFHLGRDPGERFPLSFASAEYQEALSRITSVVQQHQEALVPAQPQLNVCNWAVMNWAPPGCEKLGKCLTPPESIPKKCLWSH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 5-261 257 1-4 271-494 262-270 4 224 slipknot
view details
3.1 5-271 267 1-4 282-494 272-281 4 213 slipknot
view details
3.1 5-283 279 1-4 291-494 284-290 4 204 slipknot
view details
2.1 9-282 274 1-3, 290-494 4-8, 283-289 3 205 slipknot
view details
2.1 9-289 281 1-3, 292-494 4-8, 290-291 3 203 slipknot
sequence length 494
structure length 494
publication title The Structure of Human GALNS Reveals the Molecular Basis for Mucopolysaccharidosis IV A.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords N-acetylgalactosamine-6-sulfatase
source organism Homo sapiens
total genus Genus: 175
ec nomenclature ec 3.1.6.4: N-acetylgalactosamine-6-sulfatase.
pdb deposition date 2012-05-28
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.10 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain Arylsulfatase, C-terminal domain 4fdiA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4fdiA01
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1P49A 1KH9A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH superfamily
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1P49A 1KH9A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH topology
1FSUA 3TWZA 1EI6A 1O98A 3NVLA 1HQAA 1E2SP 1KH5A 1ANJA 1EJJA 1URAA 1K7HA 1Y6VA 2GLQA 1URBA 1ED8A 1ALJA 1EW8A 1KHKA 3DYCA 3BDGB 1SHNA 3UNYA 4FDIA 1B8JA 3BDGA 3M8ZA 2ANHA 3UN3A 2QZUA 2GA3A 1KHNA 1E1ZP 3UN2A 1SHQA 3UN5A 3ED4A 1ANIA 1O99A 3CMRA 3T01A 3MK0A 1EW9A 1ED9A 1KH7A 1ELZA 1ELXA 3IGYB 1EQJA 1AJAA 3M8YA 1P49A 1KH9A 3DPCA 3T02A 1EW2A 1N2LA 1KH4A 3T00A 1HJKA 3SZYA 1ALKA 1ZEDA 3SZZA 1AJDA 3M7VA 1E3CP 1HDHA 4FDJA 1KHLA 3BDFA 1ZEFA 2G9YA 3OT9A 3M8WA 1N2KA 2IFYA 1AJBA 3BDHA 1ALIA 1E33P 1KHJA 1AJCA 3MK1A 3TX0A 3IGZB 1ZEBA 3UO0A 1AUKA 1Y7AA 3MK2A 1ELYA
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1P49 A;  1KH9 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH topology
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1P49 A;  1KH9 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
#chains in the KnotProt database with same CATH homology
 1FSU A;  3TWZ A;  1EI6 A;  1O98 A;  3NVL A;  1HQA A;  1E2S P;  1KH5 A;  1ANJ A;  1EJJ A;  1URA A;  1K7H A;  1Y6V A;  2GLQ A;  1URB A;  1ED8 A;  1ALJ A;  1EW8 A;  1KHK A;  3DYC A;  3BDG B;  1SHN A;  3UNY A;  4FDI A;  1B8J A;  3BDG A;  3M8Z A;  2ANH A;  3UN3 A;  2QZU A;  2GA3 A;  1KHN A;  1E1Z P;  3UN2 A;  1SHQ A;  3UN5 A;  3ED4 A;  1ANI A;  1O99 A;  3CMR A;  3T01 A;  3MK0 A;  1EW9 A;  1ED9 A;  1KH7 A;  1ELZ A;  1ELX A;  3IGY B;  1EQJ A;  1AJA A;  3M8Y A;  1P49 A;  1KH9 A;  3DPC A;  3T02 A;  1EW2 A;  1N2L A;  1KH4 A;  3T00 A;  1HJK A;  3SZY A;  1ALK A;  1ZED A;  3SZZ A;  1AJD A;  3M7V A;  1E3C P;  1HDH A;  4FDJ A;  1KHL A;  3BDF A;  1ZEF A;  2G9Y A;  3OT9 A;  3M8W A;  1N2K A;  2IFY A;  1AJB A;  3BDH A;  1ALI A;  1E33 P;  1KHJ A;  1AJC A;  3MK1 A;  3TX0 A;  3IGZ B;  1ZEB A;  3UO0 A;  1AUK A;  1Y7A A;  3MK2 A;  1ELY A; 
4FDJA
similar chains in the KnotProt database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the KnotProt database (40% sequence similarity)
4FDJ A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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