3M8WA

Phosphopentomutase from bacillus cereus
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 7-328 322 1-6 343-391 329-342 6 49 slipknot
Chain Sequence
NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSTGKDTMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSVLQIAAHEEVVPLDELYKICKIARELTLDEKYMVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 5-327 323 1-4 332-391 328-331 4 60 slipknot
view details
2.1 6-328 323 1-2, 335-391 3-5, 329-334 2 57 slipknot
view details
2.1 5-336 332 1-4 340-391 337-339 4 52 slipknot
view details
4.3m 6-339 334 1-5 342-391 340-341 5 50 slipknot
view details
2.1 5-341 337 1-4 345-391 342-344 4 47 slipknot
sequence length 391
structure length 391
publication title Bacillus cereus Phosphopentomutase Is an Alkaline Phosphatase Family Member That Exhibits an Altered Entry Point into the Catalytic Cycle.
pubmed doi rcsb
molecule tags Isomerase
molecule keywords Phosphopentomutase
source organism Bacillus cereus
total genus Genus: 140
ec nomenclature ec 5.4.2.7: Phosphopentomutase.
pdb deposition date 2010-03-19
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.70.1250 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Phosphopentomutase 3m8wA02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3m8wA01
1E1ZP 3DYCA 1AJCA 1Y6VA 4FDIA 1KH9A 3BDFA 3MK1A 3NVLA 1ANJA 1KH5A 2ANHA 3T02A 1O99A 1E3CP 1Y7AA 1ZEBA 1EW2A 2GA3A 1KHJA 3IGYB 3M8ZA 1N2KA 3SZYA 3BDGA 3TWZA 3BDGB 3TX0A 3UN3A 1EI6A 2IFYA 1ELZA 1ANIA 3CMRA 3UO0A 3IGZB 3BDHA 4FDJA 1K7HA 1KHNA 1ZEFA 1SHNA 3UNYA 1KH4A 3MK2A 1ED9A 1ALIA 1AJBA 3T00A 1EW9A 2G9YA 3UN5A 1ELXA 1P49A 3DPCA 1AJAA 3M8YA 1N2LA 1B8JA 1EQJA 1ALKA 1FSUA 2QZUA 3ED4A 1URAA 1ZEDA 1SHQA 1AJDA 3M7VA 1ED8A 1KHKA 1ALJA 1ELYA 1E33P 3T01A 1EJJA 1KHLA 2GLQA 3OT9A 3M8WA 3MK0A 3UN2A 1HDHA 1E2SP 3SZZA 1KH7A 1URBA 1HJKA 1AUKA 1O98A 1HQAA 1EW8A
chains in the KnotProt database with same CATH superfamily
1E1ZP 3DYCA 1AJCA 1Y6VA 4FDIA 1KH9A 3BDFA 3MK1A 3NVLA 1ANJA 1KH5A 2ANHA 3T02A 1O99A 1E3CP 1Y7AA 1ZEBA 1EW2A 2GA3A 1KHJA 3IGYB 3M8ZA 1N2KA 3SZYA 3BDGA 3TWZA 3BDGB 3TX0A 3UN3A 1EI6A 2IFYA 1ELZA 1ANIA 3CMRA 3UO0A 3IGZB 3BDHA 3D7SD 4FDJA 1K7HA 1KHNA 1ZEFA 1SHNA 3UNYA 1KH4A 3MK2A 1ED9A 1ALIA 1AJBA 3T00A 1EW9A 2G9YA 3UN5A 1ELXA 1P49A 3DPCA 1AJAA 3M8YA 1N2LA 1B8JA 1EQJA 1ALKA 1FSUA 2QZUA 3ED4A 1URAA 1ZEDA 1SHQA 1AJDA 3M7VA 1ED8A 1KHKA 1ALJA 1ELYA 1E33P 3D7SB 3T01A 1EJJA 1KHLA 2GLQA 3OT9A 3M8WA 3MK0A 3UN2A 1HDHA 1E2SP 3SZZA 1KH7A 1URBA 1HJKA 1AUKA 1O98A 1HQAA 1EW8A
chains in the KnotProt database with same CATH topology
1E1ZP 3DYCA 1AJCA 1Y6VA 4FDIA 1KH9A 3BDFA 3MK1A 3NVLA 1ANJA 1KH5A 2ANHA 3T02A 1O99A 1E3CP 1Y7AA 1ZEBA 1EW2A 2GA3A 1KHJA 3IGYB 3M8ZA 1N2KA 3SZYA 3BDGA 3TWZA 3BDGB 3TX0A 3UN3A 1EI6A 2IFYA 1ELZA 1ANIA 3CMRA 3UO0A 3IGZB 3BDHA 4FDJA 1K7HA 1KHNA 1ZEFA 1SHNA 3UNYA 1KH4A 3MK2A 1ED9A 1ALIA 1AJBA 3T00A 1EW9A 2G9YA 3UN5A 1ELXA 1P49A 3DPCA 1AJAA 3M8YA 1N2LA 1B8JA 1EQJA 1ALKA 1FSUA 2QZUA 3ED4A 1URAA 1ZEDA 1SHQA 1AJDA 3M7VA 1ED8A 1KHKA 1ALJA 1ELYA 1E33P 3T01A 1EJJA 1KHLA 2GLQA 3OT9A 3M8WA 3MK0A 3UN2A 1HDHA 1E2SP 3SZZA 1KH7A 1URBA 1HJKA 1AUKA 1O98A 1HQAA 1EW8A
chains in the KnotProt database with same CATH homology


 
#chains in the KnotProt database with same CATH superfamily
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  3M8Z A;  1N2K A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  3UN2 A;  1HDH A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH topology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  3M8Z A;  1N2K A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  3D7S D;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3D7S B;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  3UN2 A;  1HDH A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
#chains in the KnotProt database with same CATH homology
 1E1Z P;  3DYC A;  1AJC A;  1Y6V A;  4FDI A;  1KH9 A;  3BDF A;  3MK1 A;  3NVL A;  1ANJ A;  1KH5 A;  2ANH A;  3T02 A;  1O99 A;  1E3C P;  1Y7A A;  1ZEB A;  1EW2 A;  2GA3 A;  1KHJ A;  3IGY B;  3M8Z A;  1N2K A;  3SZY A;  3BDG A;  3TWZ A;  3BDG B;  3TX0 A;  3UN3 A;  1EI6 A;  2IFY A;  1ELZ A;  1ANI A;  3CMR A;  3UO0 A;  3IGZ B;  3BDH A;  4FDJ A;  1K7H A;  1KHN A;  1ZEF A;  1SHN A;  3UNY A;  1KH4 A;  3MK2 A;  1ED9 A;  1ALI A;  1AJB A;  3T00 A;  1EW9 A;  2G9Y A;  3UN5 A;  1ELX A;  1P49 A;  3DPC A;  1AJA A;  3M8Y A;  1N2L A;  1B8J A;  1EQJ A;  1ALK A;  1FSU A;  2QZU A;  3ED4 A;  1URA A;  1ZED A;  1SHQ A;  1AJD A;  3M7V A;  1ED8 A;  1KHK A;  1ALJ A;  1ELY A;  1E33 P;  3T01 A;  1EJJ A;  1KHL A;  2GLQ A;  3OT9 A;  3M8W A;  3MK0 A;  3UN2 A;  1HDH A;  1E2S P;  3SZZ A;  1KH7 A;  1URB A;  1HJK A;  1AUK A;  1O98 A;  1HQA A;  1EW8 A; 
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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